RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 PRUNE2Q8WUY3 3088 aa14.07□□□□□ -0.16
SQSTM1-207ENST00000481335 SCN5AQ14524 2016 aa14.07□□□□□ -0.16
SQSTM1-207ENST00000481335 GCOM1H8Y6P7 765 aaPredicted RBP14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 PPP1R11O60927 126 aaPredicted RBP14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 STAM2O75886 525 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 PARNO95453 639 aaKnown RBP14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 POLR2MP0CAP2 368 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 ACRP10323 421 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 FOSL2P15408 326 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 EIF2AK2P19525 551 aaKnown RBP14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 IRX6P78412 446 aaPredicted RBP14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 LAMC2Q13753 1193 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 FAM47CQ5HY64 1035 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 CASC1Q6TDU7 716 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 MAFAQ8NHW3 353 aaPredicted RBP14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 PPTC7Q8NI37 304 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 CTCFLQ8NI51 663 aaPredicted RBP14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 CAGE1Q8TC20 777 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 IGDCC4Q8TDY8 1250 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 TMEM87BQ96K49 555 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 LZTS2Q9BRK4 669 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 SPZ1Q9BXG8 430 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 PBX4Q9BYU1 374 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 ZNF576Q9H609 170 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 MSRAQ9UJ68 235 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 MRVI1Q9Y6F6 885 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 FRMPD4Q14CM0 1322 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 UMODL1Q5DID0 1318 aa14.06□□□□□ -0.16
SQSTM1-207ENST00000481335 CYTH3O43739 400 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 ACTN1P12814 892 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 HOXD8P13378 290 aaPredicted RBP14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 MCM5P33992 734 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 GNAQP50148 359 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 CCL23P55773 120 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 ANTXR2P58335 489 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 RBL2Q08999 1139 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 PGM5Q15124 567 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 LY6KQ17RY6 165 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 BMP2KLQ5H9B9 411 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 VSIG10LQ86VR7 867 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 HOMER1Q86YM7 354 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.05□□□□□ -0.163e-7■■■□□ 14.7
SQSTM1-207ENST00000481335 AFG1LQ8WV93 481 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 PIGSQ96S52 555 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 NOD1Q9Y239 953 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 CHD9Q3L8U1 2897 aa14.05□□□□□ -0.16
SQSTM1-207ENST00000481335 DLL1O00548 723 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 F2P00734 622 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 CALM1P0DP23 149 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 CALM2P0DP24 149 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 CALM3P0DP25 149 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 CCND2P30279 289 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 LIFRP42702 1097 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 GNPTABQ3T906 1256 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 CENPQQ7L2Z9 268 aaPredicted RBP14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 ZNF654Q8IZM8 581 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 RETREG2Q8NC44 543 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 AFAP1L1Q8TED9 768 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 MYLIPQ8WY64 445 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 ESYT1Q9BSJ8 1104 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 LSG1Q9H089 658 aaKnown RBP14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 LY9Q9HBG7 655 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 SLC4A7Q9Y6M7 1214 aa14.04□□□□□ -0.16
SQSTM1-207ENST00000481335 TET1Q8NFU7 2136 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 VCANP13611 3396 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 PPFIA4O75335 1185 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 CYP2C9P11712 490 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 PTGISQ16647 500 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 SLC35G1Q2M3R5 365 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 RNF20Q5VTR2 975 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 OTOP2Q7RTS6 562 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 TEX2Q8IWB9 1127 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 DHX37Q8IY37 1157 aaKnown RBP14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 KAT2BQ92831 832 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 RRP36Q96EU6 259 aaKnown RBP14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 SCLYQ96I15 445 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 SENP2Q9HC62 589 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 CXXC1Q9P0U4 656 aaPredicted RBP14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 SEC63Q9UGP8 760 aaKnown RBP14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 GTF2IRD1Q9UHL9 959 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 TAF6LQ9Y6J9 622 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 CHD7Q9P2D1 2997 aa14.03□□□□□ -0.16
SQSTM1-207ENST00000481335 HAS3O00219 553 aa14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 PIK3CDO00329 1044 aa14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 PRC1O43663 620 aa14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 RGS20O76081 388 aa14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 BAIAP3O94812 1187 aa14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 IQCF3P0C7M6 154 aa14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 HOXA13P31271 388 aaPredicted RBP14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 GRIN2CQ14957 1233 aa14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 CELF3Q5SZQ8 465 aaKnown RBP14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 MYSM1Q5VVJ2 828 aa14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 XRRA1Q6P2D8 792 aa14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 CHST3Q7LGC8 479 aa14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 PHOSPHO2Q8TCD6 241 aa14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 VWCEQ96DN2 955 aa14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 SLC9A7Q96T83 725 aa14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 GAS2L1Q99501 681 aaPredicted RBP14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 PCDHA11Q9Y5I1 949 aa14.02□□□□□ -0.17
SQSTM1-207ENST00000481335 CCDC69A6NI79 296 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms