RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 PIK3CDO00329 1044 aa13.22□□□□□ -0.29
CCM2-213ENST00000480658 SH2B2O14492 632 aaPredicted RBP13.22□□□□□ -0.29
CCM2-213ENST00000480658 SLC27A2O14975 620 aa13.22□□□□□ -0.29
CCM2-213ENST00000480658 B4GALT4O60513 344 aa13.22□□□□□ -0.29
CCM2-213ENST00000480658 MMP3P08254 477 aa13.22□□□□□ -0.29
CCM2-213ENST00000480658 ACTN1P12814 892 aa13.22□□□□□ -0.29
CCM2-213ENST00000480658 ITGB8P26012 769 aa13.22□□□□□ -0.29
CCM2-213ENST00000480658 PGM5Q15124 567 aa13.22□□□□□ -0.29
CCM2-213ENST00000480658 RAB30Q15771 203 aa13.22□□□□□ -0.29
CCM2-213ENST00000480658 C9orf50Q5SZB4 431 aa13.22□□□□□ -0.29
CCM2-213ENST00000480658 SEPT14Q6ZU15 432 aa13.22□□□□□ -0.29
CCM2-213ENST00000480658 ZNF713Q8N859 430 aaPredicted RBP13.22□□□□□ -0.29
CCM2-213ENST00000480658 RETREG2Q8NC44 543 aa13.22□□□□□ -0.29
CCM2-213ENST00000480658 GIMAP8Q8ND71 665 aaPredicted RBP13.22□□□□□ -0.29
CCM2-213ENST00000480658 CCDC136Q96JN2 1154 aa13.22□□□□□ -0.29
CCM2-213ENST00000480658 CDHR1Q96JP9 859 aa13.22□□□□□ -0.29
CCM2-213ENST00000480658 PPP1R12CQ9BZL4 782 aa13.22□□□□□ -0.29
CCM2-213ENST00000480658 FRMPD4Q14CM0 1322 aa13.21□□□□□ -0.29
CCM2-213ENST00000480658 EPB41L2O43491 1005 aaKnown RBP13.21□□□□□ -0.29
CCM2-213ENST00000480658 PPFIA4O75335 1185 aa13.21□□□□□ -0.29
CCM2-213ENST00000480658 CSF2RAP15509 400 aa13.21□□□□□ -0.29
CCM2-213ENST00000480658 ANTXR2P58335 489 aa13.21□□□□□ -0.29
CCM2-213ENST00000480658 NEDD9Q14511 834 aa13.21□□□□□ -0.29
CCM2-213ENST00000480658 TSGA10IPQ3SY00 556 aa13.21□□□□□ -0.29
CCM2-213ENST00000480658 FAM47CQ5HY64 1035 aa13.21□□□□□ -0.29
CCM2-213ENST00000480658 VSIG10LQ86VR7 867 aa13.21□□□□□ -0.29
CCM2-213ENST00000480658 DHX37Q8IY37 1157 aaKnown RBP13.21□□□□□ -0.29
CCM2-213ENST00000480658 SMARCC2Q8TAQ2 1214 aa13.21□□□□□ -0.29
CCM2-213ENST00000480658 NOC4LQ9BVI4 516 aaKnown RBP13.21□□□□□ -0.29
CCM2-213ENST00000480658 GLT8D2Q9H1C3 349 aa13.21□□□□□ -0.29
CCM2-213ENST00000480658 COL20A1Q9P218 1284 aa13.21□□□□□ -0.29
CCM2-213ENST00000480658 DDX41Q9UJV9 622 aaKnown RBP13.21□□□□□ -0.29
CCM2-213ENST00000480658 CCDC196A0A1B0GTZ2 297 aa13.2□□□□□ -0.3
CCM2-213ENST00000480658 REC8O95072 547 aa13.2□□□□□ -0.3
CCM2-213ENST00000480658 FGBP02675 491 aa13.2□□□□□ -0.3
CCM2-213ENST00000480658 ARHGAP1Q07960 439 aa13.2□□□□□ -0.3
CCM2-213ENST00000480658 NBPF20Q3BBV1 942 aa13.2□□□□□ -0.3
CCM2-213ENST00000480658 PPP1R18Q6NYC8 613 aa13.2□□□□□ -0.3
CCM2-213ENST00000480658 CHST3Q7LGC8 479 aa13.2□□□□□ -0.3
CCM2-213ENST00000480658 C7orf31Q8N865 590 aa13.2□□□□□ -0.3
CCM2-213ENST00000480658 AFAP1L1Q8TED9 768 aa13.2□□□□□ -0.3
CCM2-213ENST00000480658 HERVK_113Q902F9 699 aa13.2□□□□□ -0.3
CCM2-213ENST00000480658 NEK1Q96PY6 1258 aa13.2□□□□□ -0.3
CCM2-213ENST00000480658 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.2□□□□□ -0.3
CCM2-213ENST00000480658 GRIN2DO15399 1336 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 SPDYE3A6NKU9 549 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 NOP56O00567 594 aaKnown RBP13.19□□□□□ -0.3
CCM2-213ENST00000480658 OPLAHO14841 1288 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 FIBPO43427 364 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 CYTH3O43739 400 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 EIF5BO60841 1220 aaKnown RBP13.19□□□□□ -0.3
CCM2-213ENST00000480658 PPP1R11O60927 126 aaPredicted RBP13.19□□□□□ -0.3
CCM2-213ENST00000480658 BAIAP3O94812 1187 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 F2P00734 622 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 MYCLP12524 364 aaPredicted RBP13.19□□□□□ -0.3
CCM2-213ENST00000480658 HOXD8P13378 290 aaPredicted RBP13.19□□□□□ -0.3
CCM2-213ENST00000480658 PSMC6P62333 389 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 IRX5P78411 483 aaPredicted RBP13.19□□□□□ -0.3
CCM2-213ENST00000480658 FGD1P98174 961 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 TMEM240Q5SV17 173 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 RASIP1Q5U651 963 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 DHX32Q7L7V1 743 aaKnown RBP13.19□□□□□ -0.3
CCM2-213ENST00000480658 NLRX1Q86UT6 975 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 FANCBQ8NB91 859 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 AFG1LQ8WV93 481 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 TRPV6Q9H1D0 765 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 MLXIPQ9HAP2 919 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 MSRAQ9UJ68 235 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 ZNF215Q9UL58 517 aaPredicted RBP13.19□□□□□ -0.3
CCM2-213ENST00000480658 DDX49Q9Y6V7 483 aaKnown RBP13.19□□□□□ -0.3
CCM2-213ENST00000480658 KIAA1217Q5T5P2 1943 aa13.19□□□□□ -0.3
CCM2-213ENST00000480658 MAFGO15525 162 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 ARIH2O95376 493 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 GNAT1P11488 350 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 DNAJB2P25686 324 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 HOXA13P31271 388 aaPredicted RBP13.18□□□□□ -0.3
CCM2-213ENST00000480658 ICAM3P32942 547 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 CYP2C18P33260 490 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 PTGISQ16647 500 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 LY6KQ17RY6 165 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 CELF3Q5SZQ8 465 aaKnown RBP13.18□□□□□ -0.3
CCM2-213ENST00000480658 PCNX4Q63HM2 1172 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 MCTP2Q6DN12 878 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 Q7L0L9 218 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 FCHSD1Q86WN1 690 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 TBC1D5Q92609 795 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 TIFAQ96CG3 184 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 SPATA33Q96N06 139 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 INPP4AQ96PE3 977 aaPredicted RBP13.18□□□□□ -0.3
CCM2-213ENST00000480658 SENP7Q9BQF6 1050 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 USP26Q9BXU7 913 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 PSTPIP2Q9H939 334 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 TRMT13Q9NUP7 481 aaKnown RBP13.18□□□□□ -0.3
CCM2-213ENST00000480658 SCN10AQ9Y5Y9 1956 aa13.18□□□□□ -0.3
CCM2-213ENST00000480658 EMSYQ7Z589 1322 aa13.17□□□□□ -0.3
CCM2-213ENST00000480658 EFCAB14O75071 495 aa13.17□□□□□ -0.3
CCM2-213ENST00000480658 CAND2O75155 1236 aa13.17□□□□□ -0.3
CCM2-213ENST00000480658 RPLP2P05387 115 aaKnown RBP13.17□□□□□ -0.3
CCM2-213ENST00000480658 UBA1P22314 1058 aaKnown RBP13.17□□□□□ -0.3
CCM2-213ENST00000480658 EPHB4P54760 987 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms