RNA–Protein interactions for RNA: ENST00000478603.5

C9orf3-216, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-216ENST00000478603 VWCEQ96DN2 955 aa26.49■■□□□ 1.83
C9orf3-216ENST00000478603 DDX41Q9UJV9 622 aaKnown RBP26.49■■□□□ 1.83
C9orf3-216ENST00000478603 TRIP12Q14669 1992 aaPredicted RBP26.48■■□□□ 1.83
C9orf3-216ENST00000478603 MYCLP12524 364 aaPredicted RBP26.48■■□□□ 1.83
C9orf3-216ENST00000478603 PDCD2LQ9BRP1 358 aa26.48■■□□□ 1.83
C9orf3-216ENST00000478603 LSG1Q9H089 658 aaKnown RBP26.48■■□□□ 1.83
C9orf3-216ENST00000478603 ZNF576Q9H609 170 aa26.48■■□□□ 1.83
C9orf3-216ENST00000478603 EYSQ5T1H1 3165 aa26.47■■□□□ 1.83
C9orf3-216ENST00000478603 FOSL2P15408 326 aa26.47■■□□□ 1.83
C9orf3-216ENST00000478603 MAFAQ8NHW3 353 aaPredicted RBP26.47■■□□□ 1.83
C9orf3-216ENST00000478603 IL31RAQ8NI17 732 aa26.47■■□□□ 1.83
C9orf3-216ENST00000478603 MYL10Q9BUA6 226 aa26.47■■□□□ 1.83
C9orf3-216ENST00000478603 MRVI1Q9Y6F6 885 aa26.47■■□□□ 1.83
C9orf3-216ENST00000478603 PNMA6FA0A0J9YX94 578 aa26.46■■□□□ 1.83
C9orf3-216ENST00000478603 COL9A3Q14050 684 aaPredicted RBP26.46■■□□□ 1.83
C9orf3-216ENST00000478603 PGM5Q15124 567 aa26.46■■□□□ 1.83
C9orf3-216ENST00000478603 FCHSD1Q86WN1 690 aa26.46■■□□□ 1.83
C9orf3-216ENST00000478603 RPUSD2Q8IZ73 545 aaKnown RBP26.46■■□□□ 1.83
C9orf3-216ENST00000478603 ZFP91Q96JP5 570 aaPredicted RBP26.46■■□□□ 1.83
C9orf3-216ENST00000478603 ESYT1Q9BSJ8 1104 aa26.46■■□□□ 1.83
C9orf3-216ENST00000478603 MTIF3Q9H2K0 278 aaKnown RBP26.46■■□□□ 1.83
C9orf3-216ENST00000478603 LY9Q9HBG7 655 aa26.46■■□□□ 1.83
C9orf3-216ENST00000478603 MAP3K20Q9NYL2 800 aaKnown RBP26.46■■□□□ 1.83
C9orf3-216ENST00000478603 TANC1Q9C0D5 1861 aa26.45■■□□□ 1.83
C9orf3-216ENST00000478603 GCOM1H8Y6P7 765 aaPredicted RBP26.45■■□□□ 1.82
C9orf3-216ENST00000478603 RGS20O76081 388 aa26.45■■□□□ 1.82
C9orf3-216ENST00000478603 POLR2MP0CAP2 368 aa26.45■■□□□ 1.82
C9orf3-216ENST00000478603 PTPN11Q06124 597 aaPredicted RBP26.45■■□□□ 1.82
C9orf3-216ENST00000478603 DEFB128Q7Z7B8 93 aa26.45■■□□□ 1.82
C9orf3-216ENST00000478603 KAT2BQ92831 832 aa26.45■■□□□ 1.82
C9orf3-216ENST00000478603 A0A0C4DFX4 3053 aa26.45■■□□□ 1.82
C9orf3-216ENST00000478603 UNC80Q8N2C7 3258 aa26.44■■□□□ 1.82
C9orf3-216ENST00000478603 PRC1O43663 620 aa26.44■■□□□ 1.82
C9orf3-216ENST00000478603 SORBS3O60504 671 aa26.44■■□□□ 1.82
C9orf3-216ENST00000478603 CASC1Q6TDU7 716 aa26.44■■□□□ 1.82
C9orf3-216ENST00000478603 PHF6Q8IWS0 365 aaKnown RBP eCLIP26.44■■□□□ 1.82
C9orf3-216ENST00000478603 ZNF654Q8IZM8 581 aa26.44■■□□□ 1.82
C9orf3-216ENST00000478603 SAMD3Q8N6K7 520 aa26.44■■□□□ 1.82
C9orf3-216ENST00000478603 SLC27A2O14975 620 aa26.43■■□□□ 1.82
C9orf3-216ENST00000478603 CASTP20810 708 aaKnown RBP26.43■■□□□ 1.82
C9orf3-216ENST00000478603 TRAF1Q13077 416 aa26.43■■□□□ 1.82
C9orf3-216ENST00000478603 DGKDQ16760 1214 aa26.43■■□□□ 1.82
C9orf3-216ENST00000478603 VSIG10LQ86VR7 867 aa26.43■■□□□ 1.82
C9orf3-216ENST00000478603 NOD1Q9Y239 953 aa26.43■■□□□ 1.82
C9orf3-216ENST00000478603 TET1Q8NFU7 2136 aa26.42■■□□□ 1.82
C9orf3-216ENST00000478603 ZBBXA8MT70 800 aa26.42■■□□□ 1.82
C9orf3-216ENST00000478603 LAMC2Q13753 1193 aa26.42■■□□□ 1.82
C9orf3-216ENST00000478603 PTGISQ16647 500 aa26.42■■□□□ 1.82
C9orf3-216ENST00000478603 GDF6Q6KF10 455 aaPredicted RBP26.42■■□□□ 1.82
C9orf3-216ENST00000478603 DHX37Q8IY37 1157 aaKnown RBP26.42■■□□□ 1.82
C9orf3-216ENST00000478603 CTCFLQ8NI51 663 aaPredicted RBP26.42■■□□□ 1.82
C9orf3-216ENST00000478603 EMID1Q96A84 441 aaPredicted RBP26.42■■□□□ 1.82
C9orf3-216ENST00000478603 DDAH1O94760 285 aa26.41■■□□□ 1.82
C9orf3-216ENST00000478603 ZNF286BP0CG31 522 aa26.41■■□□□ 1.82
C9orf3-216ENST00000478603 MCM5P33992 734 aa26.41■■□□□ 1.82
C9orf3-216ENST00000478603 RABGGTBP53611 331 aa26.41■■□□□ 1.82
C9orf3-216ENST00000478603 CREB3L3Q68CJ9 461 aa26.41■■□□□ 1.82
C9orf3-216ENST00000478603 NFXL1Q6ZNB6 911 aa26.41■■□□□ 1.82
C9orf3-216ENST00000478603 RETREG2Q8NC44 543 aa26.41■■□□□ 1.82
C9orf3-216ENST00000478603 PPTC7Q8NI37 304 aa26.41■■□□□ 1.82
C9orf3-216ENST00000478603 GPKOWQ92917 476 aaPredicted RBP eCLIP26.41■■□□□ 1.82
C9orf3-216ENST00000478603 CTAGE1Q96RT6 745 aa26.41■■□□□ 1.82
C9orf3-216ENST00000478603 NKX2-4Q9H2Z4 354 aa26.41■■□□□ 1.82
C9orf3-216ENST00000478603 ANO2Q9NQ90 1003 aa26.41■■□□□ 1.82
C9orf3-216ENST00000478603 MSRAQ9UJ68 235 aa26.41■■□□□ 1.82
C9orf3-216ENST00000478603 YBX2Q9Y2T7 364 aaKnown RBP26.41■■□□□ 1.82
C9orf3-216ENST00000478603 SLC4A7Q9Y6M7 1214 aa26.41■■□□□ 1.82
C9orf3-216ENST00000478603 PITPNM1O00562 1244 aa26.4■■□□□ 1.82
C9orf3-216ENST00000478603 SH2B2O14492 632 aaPredicted RBP26.4■■□□□ 1.82
C9orf3-216ENST00000478603 IQCF3P0C7M6 154 aa26.4■■□□□ 1.82
C9orf3-216ENST00000478603 CCND2P30279 289 aa26.4■■□□□ 1.82
C9orf3-216ENST00000478603 SP2Q02086 613 aa26.4■■□□□ 1.82
C9orf3-216ENST00000478603 RAB30Q15771 203 aa26.4■■□□□ 1.82
C9orf3-216ENST00000478603 MAP3K14Q99558 947 aa26.4■■□□□ 1.82
C9orf3-216ENST00000478603 ALG1Q9BT22 464 aa26.4■■□□□ 1.82
C9orf3-216ENST00000478603 SPZ1Q9BXG8 430 aa26.4■■□□□ 1.82
C9orf3-216ENST00000478603 DOCK5Q9H7D0 1870 aa26.4■■□□□ 1.82
C9orf3-216ENST00000478603 PLEKHA8P1O95397 391 aa26.39■■□□□ 1.82
C9orf3-216ENST00000478603 GGPS1O95749 300 aa26.39■■□□□ 1.82
C9orf3-216ENST00000478603 PFKMP08237 780 aa26.39■■□□□ 1.82
C9orf3-216ENST00000478603 RXRAP19793 462 aa26.39■■□□□ 1.82
C9orf3-216ENST00000478603 PSEN2P49810 448 aa26.39■■□□□ 1.82
C9orf3-216ENST00000478603 BFSP2Q13515 415 aa26.39■■□□□ 1.82
C9orf3-216ENST00000478603 NECTIN1Q15223 517 aa26.39■■□□□ 1.82
C9orf3-216ENST00000478603 MYSM1Q5VVJ2 828 aa26.39■■□□□ 1.82
C9orf3-216ENST00000478603 SESTD1Q86VW0 696 aa26.39■■□□□ 1.82
C9orf3-216ENST00000478603 RAB11FIP4Q86YS3 637 aa26.39■■□□□ 1.82
C9orf3-216ENST00000478603 LRRC2Q9BYS8 371 aa26.39■■□□□ 1.82
C9orf3-216ENST00000478603 HDAC6Q9UBN7 1215 aa26.39■■□□□ 1.82
C9orf3-216ENST00000478603 PRUNE2Q8WUY3 3088 aa26.38■■□□□ 1.81
C9orf3-216ENST00000478603 CCDC69A6NI79 296 aa26.38■■□□□ 1.81
C9orf3-216ENST00000478603 UBA1P22314 1058 aaKnown RBP26.38■■□□□ 1.81
C9orf3-216ENST00000478603 KIF5BP33176 963 aa26.38■■□□□ 1.81
C9orf3-216ENST00000478603 MFSD10Q14728 455 aa26.38■■□□□ 1.81
C9orf3-216ENST00000478603 HSDL1Q3SXM5 330 aa26.38■■□□□ 1.81
C9orf3-216ENST00000478603 CELF3Q5SZQ8 465 aaKnown RBP26.38■■□□□ 1.81
C9orf3-216ENST00000478603 KCNV1Q6PIU1 500 aa26.38■■□□□ 1.81
C9orf3-216ENST00000478603 CMTR1Q8N1G2 835 aaKnown RBP26.38■■□□□ 1.81
C9orf3-216ENST00000478603 RRP36Q96EU6 259 aaKnown RBP26.38■■□□□ 1.81
C9orf3-216ENST00000478603 TMEM87BQ96K49 555 aa26.38■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms