RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 MICU3Q86XE3 530 aa13.81□□□□□ -0.2
SYNE1-221ENST00000472563 RAB11FIP4Q86YS3 637 aa13.81□□□□□ -0.2
SYNE1-221ENST00000472563 CMTR1Q8N1G2 835 aaKnown RBP13.81□□□□□ -0.2
SYNE1-221ENST00000472563 EMID1Q96A84 441 aaPredicted RBP13.81□□□□□ -0.2
SYNE1-221ENST00000472563 TCEANC2Q96MN5 208 aa13.81□□□□□ -0.2
SYNE1-221ENST00000472563 ALDH8A1Q9H2A2 487 aaPredicted RBP13.81□□□□□ -0.2
SYNE1-221ENST00000472563 BRPF3Q9ULD4 1205 aa13.81□□□□□ -0.2
SYNE1-221ENST00000472563 MRVI1Q9Y6F6 885 aa13.81□□□□□ -0.2
SYNE1-221ENST00000472563 TGFB3P10600 412 aa13.8□□□□□ -0.2
SYNE1-221ENST00000472563 CCND2P30279 289 aa13.8□□□□□ -0.2
SYNE1-221ENST00000472563 RCAN1P53805 252 aa13.8□□□□□ -0.2
SYNE1-221ENST00000472563 EPHB4P54760 987 aa13.8□□□□□ -0.2
SYNE1-221ENST00000472563 LAMC2Q13753 1193 aa13.8□□□□□ -0.2
SYNE1-221ENST00000472563 IL31RAQ8NI17 732 aa13.8□□□□□ -0.2
SYNE1-221ENST00000472563 AFG1LQ8WV93 481 aa13.8□□□□□ -0.2
SYNE1-221ENST00000472563 CUL5Q93034 780 aa13.8□□□□□ -0.2
SYNE1-221ENST00000472563 TRPV6Q9H1D0 765 aa13.8□□□□□ -0.2
SYNE1-221ENST00000472563 RBM28Q9NW13 759 aaKnown RBP13.8□□□□□ -0.2
SYNE1-221ENST00000472563 SNX14Q9Y5W7 946 aa13.8□□□□□ -0.2
SYNE1-221ENST00000472563 FRMPD4Q14CM0 1322 aa13.8□□□□□ -0.2
SYNE1-221ENST00000472563 MEIS2O14770 477 aa13.79□□□□□ -0.2
SYNE1-221ENST00000472563 ZBTB43O43298 467 aa13.79□□□□□ -0.2
SYNE1-221ENST00000472563 B4GALT4O60513 344 aa13.79□□□□□ -0.2
SYNE1-221ENST00000472563 STAM2O75886 525 aa13.79□□□□□ -0.2
SYNE1-221ENST00000472563 SUPT20HL2P0C7V6 817 aa13.79□□□□□ -0.2
SYNE1-221ENST00000472563 FUT2Q10981 343 aa13.79□□□□□ -0.2
SYNE1-221ENST00000472563 RTN1Q16799 776 aa13.79□□□□□ -0.2
SYNE1-221ENST00000472563 NBPF20Q3BBV1 942 aa13.79□□□□□ -0.2
SYNE1-221ENST00000472563 XRRA1Q6P2D8 792 aa13.79□□□□□ -0.2
SYNE1-221ENST00000472563 NFRKBQ6P4R8 1299 aa13.79□□□□□ -0.2
SYNE1-221ENST00000472563 CCDC82Q8N4S0 544 aa13.79□□□□□ -0.2
SYNE1-221ENST00000472563 TMEM199Q8N511 208 aa13.79□□□□□ -0.2
SYNE1-221ENST00000472563 SMARCC2Q8TAQ2 1214 aa13.79□□□□□ -0.2
SYNE1-221ENST00000472563 JAKMIP1Q96N16 626 aaKnown RBP13.79□□□□□ -0.2
SYNE1-221ENST00000472563 PSTPIP2Q9H939 334 aa13.79□□□□□ -0.2
SYNE1-221ENST00000472563 KLF18A0A0U1RQI7 1052 aa13.78□□□□□ -0.2
SYNE1-221ENST00000472563 CENPBP07199 599 aaPredicted RBP13.78□□□□□ -0.2
SYNE1-221ENST00000472563 MMP3P08254 477 aa13.78□□□□□ -0.2
SYNE1-221ENST00000472563 CASTP20810 708 aaKnown RBP13.78□□□□□ -0.2
SYNE1-221ENST00000472563 FGD1P98174 961 aa13.78□□□□□ -0.2
SYNE1-221ENST00000472563 PTPN11Q06124 597 aaPredicted RBP13.78□□□□□ -0.2
SYNE1-221ENST00000472563 PPIGQ13427 754 aaKnown RBP eCLIP13.78□□□□□ -0.2
SYNE1-221ENST00000472563 DGKDQ16760 1214 aa13.78□□□□□ -0.2
SYNE1-221ENST00000472563 USP17L6PQ6QN14 398 aa13.78□□□□□ -0.2
SYNE1-221ENST00000472563 BLOC1S2Q6QNY1 142 aa13.78□□□□□ -0.2
SYNE1-221ENST00000472563 TEX2Q8IWB9 1127 aa13.78□□□□□ -0.2
SYNE1-221ENST00000472563 DHX37Q8IY37 1157 aaKnown RBP13.78□□□□□ -0.2
SYNE1-221ENST00000472563 FBXL16Q8N461 479 aa13.78□□□□□ -0.2
SYNE1-221ENST00000472563 PPTC7Q8NI37 304 aa13.78□□□□□ -0.2
SYNE1-221ENST00000472563 INPP4AQ96PE3 977 aaPredicted RBP13.78□□□□□ -0.2
SYNE1-221ENST00000472563 NOC4LQ9BVI4 516 aaKnown RBP13.78□□□□□ -0.2
SYNE1-221ENST00000472563 PPP1R12CQ9BZL4 782 aa13.78□□□□□ -0.2
SYNE1-221ENST00000472563 HIPK3Q9H422 1215 aa13.78□□□□□ -0.2
SYNE1-221ENST00000472563 LRRC37A2A6NM11 1700 aa13.78□□□□□ -0.2
SYNE1-221ENST00000472563 hCG_1642624A0A1W2PR95 340 aa13.77□□□□□ -0.21
SYNE1-221ENST00000472563 GOLGA8AA7E2F4 631 aa13.77□□□□□ -0.21
SYNE1-221ENST00000472563 GOLGA8BA8MQT2 603 aa13.77□□□□□ -0.21
SYNE1-221ENST00000472563 PPFIA4O75335 1185 aa13.77□□□□□ -0.21
SYNE1-221ENST00000472563 LCTP09848 1927 aa13.77□□□□□ -0.21
SYNE1-221ENST00000472563 HOXD8P13378 290 aaPredicted RBP13.77□□□□□ -0.21
SYNE1-221ENST00000472563 CPA1P15085 419 aa13.77□□□□□ -0.21
SYNE1-221ENST00000472563 PSMA5P28066 241 aa13.77□□□□□ -0.21
SYNE1-221ENST00000472563 ICAM3P32942 547 aa13.77□□□□□ -0.21
SYNE1-221ENST00000472563 CYP2C18P33260 490 aa13.77□□□□□ -0.21
SYNE1-221ENST00000472563 MRPS9P82933 396 aaKnown RBP13.77□□□□□ -0.21
SYNE1-221ENST00000472563 GNPTABQ3T906 1256 aa13.77□□□□□ -0.21
SYNE1-221ENST00000472563 CELF3Q5SZQ8 465 aaKnown RBP13.77□□□□□ -0.21
SYNE1-221ENST00000472563 SZT2Q5T011 3432 aa13.77□□□□□ -0.21
SYNE1-221ENST00000472563 MYSM1Q5VVJ2 828 aa13.77□□□□□ -0.21
SYNE1-221ENST00000472563 C16orf59Q7L2K0 433 aa13.77□□□□□ -0.21
SYNE1-221ENST00000472563 KAT2BQ92831 832 aa13.77□□□□□ -0.21
SYNE1-221ENST00000472563 FAM217BQ9NTX9 383 aaPredicted RBP13.77□□□□□ -0.21
SYNE1-221ENST00000472563 TRMT13Q9NUP7 481 aaKnown RBP13.77□□□□□ -0.21
SYNE1-221ENST00000472563 CNTNAP5Q8WYK1 1306 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 CCDC196A0A1B0GTZ2 297 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 SPATA31C2B4DYI2 1134 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 GGPS1O95749 300 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 CSF2RAP15509 400 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 UBA1P22314 1058 aaKnown RBP13.76□□□□□ -0.21
SYNE1-221ENST00000472563 RPS6KB1P23443 525 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 SP2Q02086 613 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 FAM47CQ5HY64 1035 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 PCNX4Q63HM2 1172 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 FAM109BQ6ICB4 259 aaPredicted RBP13.76□□□□□ -0.21
SYNE1-221ENST00000472563 Q6ZUG5 572 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 HEATR3Q7Z4Q2 680 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 SESTD1Q86VW0 696 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 BRF1Q92994 677 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 ZFP91Q96JP5 570 aaPredicted RBP13.76□□□□□ -0.21
SYNE1-221ENST00000472563 RNPC3Q96LT9 517 aaKnown RBP13.76□□□□□ -0.21
SYNE1-221ENST00000472563 SPATA33Q96N06 139 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 V9GY48 417 aaPredicted RBP13.76□□□□□ -0.21
SYNE1-221ENST00000472563 MCM3APO60318 1980 aa13.76□□□□□ -0.21
SYNE1-221ENST00000472563 UMODL1Q5DID0 1318 aa13.75□□□□□ -0.21
SYNE1-221ENST00000472563 hCG_1984214I3L0E3 225 aa13.75□□□□□ -0.21
SYNE1-221ENST00000472563 FIBPO43427 364 aa13.75□□□□□ -0.21
SYNE1-221ENST00000472563 CYP2C9P11712 490 aa13.75□□□□□ -0.21
SYNE1-221ENST00000472563 CDC27P30260 824 aa13.75□□□□□ -0.21
SYNE1-221ENST00000472563 SMAD3P84022 425 aaKnown RBP13.75□□□□□ -0.21
SYNE1-221ENST00000472563 HSDL1Q3SXM5 330 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms