RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 DCXO43602 365 aa21.68■■□□□ 1.06
SHH-205ENST00000472308 LY6KQ17RY6 165 aa21.68■■□□□ 1.06
SHH-205ENST00000472308 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.68■■□□□ 1.06
SHH-205ENST00000472308 FBXO22Q8NEZ5 403 aa21.68■■□□□ 1.06
SHH-205ENST00000472308 MPHOSPH6Q99547 160 aaKnown RBP21.68■■□□□ 1.06
SHH-205ENST00000472308 TMEM47Q9BQJ4 181 aa21.68■■□□□ 1.06
SHH-205ENST00000472308 ANAPC4Q9UJX5 808 aa21.68■■□□□ 1.06
SHH-205ENST00000472308 USP34Q70CQ2 3546 aa21.68■■□□□ 1.06
SHH-205ENST00000472308 WDR19Q8NEZ3 1342 aa21.67■■□□□ 1.06
SHH-205ENST00000472308 ORC4O43929 436 aa21.67■■□□□ 1.06
SHH-205ENST00000472308 EFCAB14O75071 495 aa21.67■■□□□ 1.06
SHH-205ENST00000472308 IKBKEQ14164 716 aa21.67■■□□□ 1.06
SHH-205ENST00000472308 CSPP1Q1MSJ5 1256 aa21.67■■□□□ 1.06
SHH-205ENST00000472308 MRPL38Q96DV4 380 aaKnown RBP21.67■■□□□ 1.06
SHH-205ENST00000472308 HDAC6Q9UBN7 1215 aa21.67■■□□□ 1.06
SHH-205ENST00000472308 ZNF318Q5VUA4 2279 aa21.66■■□□□ 1.06
SHH-205ENST00000472308 GH1P01241 217 aa21.66■■□□□ 1.06
SHH-205ENST00000472308 FGRP09769 529 aa21.66■■□□□ 1.06
SHH-205ENST00000472308 PDHBP11177 359 aa21.66■■□□□ 1.06
SHH-205ENST00000472308 TOP1P11387 765 aaKnown RBP21.66■■□□□ 1.06
SHH-205ENST00000472308 HTRA4P83105 476 aaPredicted RBP21.66■■□□□ 1.06
SHH-205ENST00000472308 ZP2Q05996 745 aa21.66■■□□□ 1.06
SHH-205ENST00000472308 PUS10Q3MIT2 529 aaKnown RBP21.66■■□□□ 1.06
SHH-205ENST00000472308 ZNF618Q5T7W0 954 aa21.66■■□□□ 1.06
SHH-205ENST00000472308 PI4K2BQ8TCG2 481 aa21.66■■□□□ 1.06
SHH-205ENST00000472308 SP7Q8TDD2 431 aaPredicted RBP21.66■■□□□ 1.06
SHH-205ENST00000472308 ANKS1AQ92625 1134 aa21.66■■□□□ 1.06
SHH-205ENST00000472308 COL19A1Q14993 1142 aa21.65■■□□□ 1.06
SHH-205ENST00000472308 VPS53Q5VIR6 699 aa21.65■■□□□ 1.06
SHH-205ENST00000472308 CHST3Q7LGC8 479 aa21.65■■□□□ 1.06
SHH-205ENST00000472308 CRBNQ96SW2 442 aa21.65■■□□□ 1.06
SHH-205ENST00000472308 FSD1Q9BTV5 496 aa21.65■■□□□ 1.06
SHH-205ENST00000472308 CHMP4BQ9H444 224 aaKnown RBP21.65■■□□□ 1.06
SHH-205ENST00000472308 INSL6Q9Y581 213 aa21.65■■□□□ 1.06
SHH-205ENST00000472308 CASTP20810 708 aaKnown RBP21.64■■□□□ 1.05
SHH-205ENST00000472308 PSEN2P49810 448 aa21.64■■□□□ 1.05
SHH-205ENST00000472308 ZNF543Q08ER8 600 aa21.64■■□□□ 1.05
SHH-205ENST00000472308 PTK7Q13308 1070 aa21.64■■□□□ 1.05
SHH-205ENST00000472308 HIC1Q14526 733 aa21.64■■□□□ 1.05
SHH-205ENST00000472308 SEPT14Q6ZU15 432 aa21.64■■□□□ 1.05
SHH-205ENST00000472308 C7orf31Q8N865 590 aa21.64■■□□□ 1.05
SHH-205ENST00000472308 KCNH6Q9H252 994 aa21.64■■□□□ 1.05
SHH-205ENST00000472308 DCTPP1Q9H773 170 aa21.64■■□□□ 1.05
SHH-205ENST00000472308 COL20A1Q9P218 1284 aa21.64■■□□□ 1.05
SHH-205ENST00000472308 PNMA2Q9UL42 364 aa21.64■■□□□ 1.05
SHH-205ENST00000472308 C19orf67A6NJJ6 358 aa21.63■■□□□ 1.05
SHH-205ENST00000472308 HAS3O00219 553 aa21.63■■□□□ 1.05
SHH-205ENST00000472308 LGR5O75473 907 aa21.63■■□□□ 1.05
SHH-205ENST00000472308 F2P00734 622 aa21.63■■□□□ 1.05
SHH-205ENST00000472308 ZNF200P98182 395 aaPredicted RBP21.63■■□□□ 1.05
SHH-205ENST00000472308 EPC2Q52LR7 807 aa21.63■■□□□ 1.05
SHH-205ENST00000472308 RGS22Q8NE09 1264 aa21.63■■□□□ 1.05
SHH-205ENST00000472308 TBC1D5Q92609 795 aa21.63■■□□□ 1.05
SHH-205ENST00000472308 TTC41PQ6P2S7 1318 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 B4DLN1 442 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 ZNF286BP0CG31 522 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 SNHG28P0DPA3 235 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 MRPL12P52815 198 aaKnown RBP21.62■■□□□ 1.05
SHH-205ENST00000472308 MFSD10Q14728 455 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 DGKDQ16760 1214 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 USH1GQ495M9 461 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 TIGD5Q53EQ6 642 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 TCEAL5Q5H9L2 206 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 C20orf194Q5TEA3 1177 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 HFE2Q6ZVN8 426 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 BANK1Q8NDB2 785 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 OTUD7AQ8TE49 926 aaPredicted RBP21.62■■□□□ 1.05
SHH-205ENST00000472308 PABPC5Q96DU9 382 aaKnown RBP21.62■■□□□ 1.05
SHH-205ENST00000472308 ALG1Q9BT22 464 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 TCP11L1Q9NUJ3 509 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 MICAL3Q7RTP6 2002 aa21.62■■□□□ 1.05
SHH-205ENST00000472308 COL4A6Q14031 1691 aa21.61■■□□□ 1.05
SHH-205ENST00000472308 PTPROQ16827 1216 aa21.61■■□□□ 1.05
SHH-205ENST00000472308 KIAA0753Q2KHM9 967 aa21.61■■□□□ 1.05
SHH-205ENST00000472308 MYOCDQ8IZQ8 938 aa21.61■■□□□ 1.05
SHH-205ENST00000472308 DBF4BQ8NFT6 615 aa21.61■■□□□ 1.05
SHH-205ENST00000472308 SYTL5Q8TDW5 730 aaPredicted RBP21.61■■□□□ 1.05
SHH-205ENST00000472308 EMID1Q96A84 441 aaPredicted RBP21.61■■□□□ 1.05
SHH-205ENST00000472308 SNX27Q96L92 541 aa21.61■■□□□ 1.05
SHH-205ENST00000472308 TAAR1Q96RJ0 339 aa21.61■■□□□ 1.05
SHH-205ENST00000472308 PRKAG3Q9UGI9 489 aa21.61■■□□□ 1.05
SHH-205ENST00000472308 CTNNA3Q9UI47 895 aa21.61■■□□□ 1.05
SHH-205ENST00000472308 DDX41Q9UJV9 622 aaKnown RBP21.61■■□□□ 1.05
SHH-205ENST00000472308 H3BNC9 293 aa21.6■■□□□ 1.05
SHH-205ENST00000472308 AMHP03971 560 aa21.6■■□□□ 1.05
SHH-205ENST00000472308 ADHFE1Q8IWW8 467 aa21.6■■□□□ 1.05
SHH-205ENST00000472308 KATNAL1Q9BW62 490 aa21.6■■□□□ 1.05
SHH-205ENST00000472308 CPVLQ9H3G5 476 aa21.6■■□□□ 1.05
SHH-205ENST00000472308 KIAA1217Q5T5P2 1943 aa21.6■■□□□ 1.05
SHH-205ENST00000472308 IRS1P35568 1242 aa21.59■■□□□ 1.05
SHH-205ENST00000472308 RRP12Q5JTH9 1297 aaKnown RBP21.59■■□□□ 1.05
SHH-205ENST00000472308 PPTC7Q8NI37 304 aa21.59■■□□□ 1.05
SHH-205ENST00000472308 SAMD11Q96NU1 681 aa21.59■■□□□ 1.05
SHH-205ENST00000472308 TOMM22Q9NS69 142 aa21.59■■□□□ 1.05
SHH-205ENST00000472308 EMSYQ7Z589 1322 aa21.58■■□□□ 1.05
SHH-205ENST00000472308 HOXD8P13378 290 aaPredicted RBP21.58■■□□□ 1.05
SHH-205ENST00000472308 LTBRP36941 435 aa21.58■■□□□ 1.05
SHH-205ENST00000472308 GPM6BQ13491 265 aa21.58■■□□□ 1.05
SHH-205ENST00000472308 ALX1Q15699 326 aa21.58■■□□□ 1.05
SHH-205ENST00000472308 PLEKHG4Q58EX7 1191 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms