RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 DDX41Q9UJV9 622 aaKnown RBP20.33■□□□□ 0.85
COL7A1-208ENST00000470076 PCDHA1Q9Y5I3 950 aa20.33■□□□□ 0.85
COL7A1-208ENST00000470076 TTC28Q96AY4 2481 aa20.33■□□□□ 0.84
COL7A1-208ENST00000470076 IFIT3O14879 490 aaKnown RBP20.32■□□□□ 0.84
COL7A1-208ENST00000470076 ACTN1P12814 892 aa20.32■□□□□ 0.84
COL7A1-208ENST00000470076 PTH1RQ03431 593 aa20.32■□□□□ 0.84
COL7A1-208ENST00000470076 CHST3Q7LGC8 479 aa20.32■□□□□ 0.84
COL7A1-208ENST00000470076 DEFB128Q7Z7B8 93 aa20.32■□□□□ 0.84
COL7A1-208ENST00000470076 RALYLQ86SE5 291 aaKnown RBP20.32■□□□□ 0.84
COL7A1-208ENST00000470076 SESTD1Q86VW0 696 aa20.32■□□□□ 0.84
COL7A1-208ENST00000470076 PPP1R13LQ8WUF5 828 aa20.32■□□□□ 0.84
COL7A1-208ENST00000470076 EMID1Q96A84 441 aaPredicted RBP20.32■□□□□ 0.84
COL7A1-208ENST00000470076 YBX2Q9Y2T7 364 aaKnown RBP20.32■□□□□ 0.84
COL7A1-208ENST00000470076 PCDHA11Q9Y5I1 949 aa20.32■□□□□ 0.84
COL7A1-208ENST00000470076 BAZ2BQ9UIF8 2168 aaKnown RBP20.31■□□□□ 0.84
COL7A1-208ENST00000470076 PPP1R11O60927 126 aaPredicted RBP20.31■□□□□ 0.84
COL7A1-208ENST00000470076 IQCF3P0C7M6 154 aa20.31■□□□□ 0.84
COL7A1-208ENST00000470076 ATP2A2P16615 1042 aaKnown RBP20.31■□□□□ 0.84
COL7A1-208ENST00000470076 CHMP4BP1P59074 171 aa20.31■□□□□ 0.84
COL7A1-208ENST00000470076 GRM4Q14833 912 aa20.31■□□□□ 0.84
COL7A1-208ENST00000470076 SART3Q15020 963 aaKnown RBP20.31■□□□□ 0.84
COL7A1-208ENST00000470076 PTGISQ16647 500 aa20.31■□□□□ 0.84
COL7A1-208ENST00000470076 DGKDQ16760 1214 aa20.31■□□□□ 0.84
COL7A1-208ENST00000470076 STOX1Q6ZVD7 989 aa20.31■□□□□ 0.84
COL7A1-208ENST00000470076 CCDC155Q8N6L0 562 aa20.31■□□□□ 0.84
COL7A1-208ENST00000470076 USP38Q8NB14 1042 aa20.31■□□□□ 0.84
COL7A1-208ENST00000470076 NCOA7Q8NI08 942 aa20.31■□□□□ 0.84
COL7A1-208ENST00000470076 RIOX1Q9H6W3 641 aa20.31■□□□□ 0.84
COL7A1-208ENST00000470076 MRVI1Q9Y6F6 885 aa20.31■□□□□ 0.84
COL7A1-208ENST00000470076 TRIP12Q14669 1992 aaPredicted RBP20.31■□□□□ 0.84
COL7A1-208ENST00000470076 MYH7BA7E2Y1 1941 aa20.31■□□□□ 0.84
COL7A1-208ENST00000470076 SGSM2O43147 1006 aa20.3■□□□□ 0.84
COL7A1-208ENST00000470076 LAMC2Q13753 1193 aa20.3■□□□□ 0.84
COL7A1-208ENST00000470076 KCNV1Q6PIU1 500 aa20.3■□□□□ 0.84
COL7A1-208ENST00000470076 CAGE1Q8TC20 777 aa20.3■□□□□ 0.84
COL7A1-208ENST00000470076 KAT2BQ92831 832 aa20.3■□□□□ 0.84
COL7A1-208ENST00000470076 PDCD2LQ9BRP1 358 aa20.3■□□□□ 0.84
COL7A1-208ENST00000470076 E7EWF7 191 aa20.29■□□□□ 0.84
COL7A1-208ENST00000470076 RABGGTBP53611 331 aa20.29■□□□□ 0.84
COL7A1-208ENST00000470076 WTAPQ15007 396 aa20.29■□□□□ 0.84
COL7A1-208ENST00000470076 PPP2R2DQ66LE6 453 aa20.29■□□□□ 0.84
COL7A1-208ENST00000470076 HOMER1Q86YM7 354 aa20.29■□□□□ 0.84
COL7A1-208ENST00000470076 PPTC7Q8NI37 304 aa20.29■□□□□ 0.84
COL7A1-208ENST00000470076 AFAP1L1Q8TED9 768 aa20.29■□□□□ 0.84
COL7A1-208ENST00000470076 SYMPKQ92797 1274 aaKnown RBP20.29■□□□□ 0.84
COL7A1-208ENST00000470076 PIGSQ96S52 555 aa20.29■□□□□ 0.84
COL7A1-208ENST00000470076 KATNAL1Q9BW62 490 aa20.29■□□□□ 0.84
COL7A1-208ENST00000470076 SPTBN5Q9NRC6 3674 aaKnown RBP20.29■□□□□ 0.84
COL7A1-208ENST00000470076 TRANK1O15050 2925 aa20.29■□□□□ 0.84
COL7A1-208ENST00000470076 TET1Q8NFU7 2136 aa20.29■□□□□ 0.84
COL7A1-208ENST00000470076 MYCLP12524 364 aaPredicted RBP20.28■□□□□ 0.84
COL7A1-208ENST00000470076 HOXA13P31271 388 aaPredicted RBP20.28■□□□□ 0.84
COL7A1-208ENST00000470076 TROAPQ12815 778 aa20.28■□□□□ 0.84
COL7A1-208ENST00000470076 ADGRE1Q14246 886 aa20.28■□□□□ 0.84
COL7A1-208ENST00000470076 SLC35G1Q2M3R5 365 aa20.28■□□□□ 0.84
COL7A1-208ENST00000470076 GDF6Q6KF10 455 aaPredicted RBP20.28■□□□□ 0.84
COL7A1-208ENST00000470076 VSIG10LQ86VR7 867 aa20.28■□□□□ 0.84
COL7A1-208ENST00000470076 DHX37Q8IY37 1157 aaKnown RBP20.28■□□□□ 0.84
COL7A1-208ENST00000470076 PHOSPHO2Q8TCD6 241 aa20.28■□□□□ 0.84
COL7A1-208ENST00000470076 SLC9A7Q96T83 725 aa20.28■□□□□ 0.84
COL7A1-208ENST00000470076 FTOQ9C0B1 505 aaKnown RBP eCLIP20.28■□□□□ 0.84
COL7A1-208ENST00000470076 PNMA6FA0A0J9YX94 578 aa20.27■□□□□ 0.84
COL7A1-208ENST00000470076 GCOM1H8Y6P7 765 aaPredicted RBP20.27■□□□□ 0.84
COL7A1-208ENST00000470076 RGS20O76081 388 aa20.27■□□□□ 0.84
COL7A1-208ENST00000470076 POLR2MP0CAP2 368 aa20.27■□□□□ 0.84
COL7A1-208ENST00000470076 PGM5Q15124 567 aa20.27■□□□□ 0.84
COL7A1-208ENST00000470076 TMEM67Q5HYA8 995 aa20.27■□□□□ 0.84
COL7A1-208ENST00000470076 CATIPQ7Z7H3 387 aa20.27■□□□□ 0.84
COL7A1-208ENST00000470076 C7orf31Q8N865 590 aa20.27■□□□□ 0.84
COL7A1-208ENST00000470076 MAP4K1Q92918 833 aa20.27■□□□□ 0.84
COL7A1-208ENST00000470076 CTAGE1Q96RT6 745 aa20.27■□□□□ 0.84
COL7A1-208ENST00000470076 SENP2Q9HC62 589 aa20.27■□□□□ 0.84
COL7A1-208ENST00000470076 GTF2IRD1Q9UHL9 959 aa20.27■□□□□ 0.84
COL7A1-208ENST00000470076 TAF6LQ9Y6J9 622 aa20.27■□□□□ 0.84
COL7A1-208ENST00000470076 CYTH3O43739 400 aa20.26■□□□□ 0.83
COL7A1-208ENST00000470076 PPFIA4O75335 1185 aa20.26■□□□□ 0.83
COL7A1-208ENST00000470076 BAIAP3O94812 1187 aa20.26■□□□□ 0.83
COL7A1-208ENST00000470076 PARNO95453 639 aaKnown RBP20.26■□□□□ 0.83
COL7A1-208ENST00000470076 F2P00734 622 aa20.26■□□□□ 0.83
COL7A1-208ENST00000470076 TGFB3P10600 412 aa20.26■□□□□ 0.83
COL7A1-208ENST00000470076 MYOGP15173 224 aa20.26■□□□□ 0.83
COL7A1-208ENST00000470076 IGFBP4P22692 258 aa20.26■□□□□ 0.83
COL7A1-208ENST00000470076 PSEN2P49810 448 aa20.26■□□□□ 0.83
COL7A1-208ENST00000470076 RBL2Q08999 1139 aa20.26■□□□□ 0.83
COL7A1-208ENST00000470076 MYSM1Q5VVJ2 828 aa20.26■□□□□ 0.83
COL7A1-208ENST00000470076 PPM1EQ8WY54 764 aa20.26■□□□□ 0.83
COL7A1-208ENST00000470076 HAS3O00219 553 aa20.25■□□□□ 0.83
COL7A1-208ENST00000470076 HOXD8P13378 290 aaPredicted RBP20.25■□□□□ 0.83
COL7A1-208ENST00000470076 SELPP16109 830 aa20.25■□□□□ 0.83
COL7A1-208ENST00000470076 CCND2P30279 289 aa20.25■□□□□ 0.83
COL7A1-208ENST00000470076 IRX6P78412 446 aaPredicted RBP20.25■□□□□ 0.83
COL7A1-208ENST00000470076 MFSD10Q14728 455 aa20.25■□□□□ 0.83
COL7A1-208ENST00000470076 TJAP1Q5JTD0 557 aa20.25■□□□□ 0.83
COL7A1-208ENST00000470076 CELF3Q5SZQ8 465 aaKnown RBP20.25■□□□□ 0.83
COL7A1-208ENST00000470076 IGDCC4Q8TDY8 1250 aa20.25■□□□□ 0.83
COL7A1-208ENST00000470076 HDAC6Q9UBN7 1215 aa20.25■□□□□ 0.83
COL7A1-208ENST00000470076 GGPS1O95749 300 aa20.24■□□□□ 0.83
COL7A1-208ENST00000470076 ZNF286BP0CG31 522 aa20.24■□□□□ 0.83
COL7A1-208ENST00000470076 ANTXR2P58335 489 aa20.24■□□□□ 0.83
COL7A1-208ENST00000470076 KIAA0753Q2KHM9 967 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms