RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 RMDN3Q96TC7 470 aa12.19□□□□□ -0.46
MSX1-202ENST00000468421 NAP1L4Q99733 375 aaKnown RBP12.19□□□□□ -0.46
MSX1-202ENST00000468421 PDCD2LQ9BRP1 358 aa12.19□□□□□ -0.46
MSX1-202ENST00000468421 MAF1Q9H063 256 aa12.19□□□□□ -0.46
MSX1-202ENST00000468421 CSRNP2Q9H175 543 aa12.19□□□□□ -0.46
MSX1-202ENST00000468421 CPA4Q9UI42 421 aa12.19□□□□□ -0.46
MSX1-202ENST00000468421 DOCK3Q8IZD9 2030 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 PFASO15067 1338 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 A0A1B0GVL5 298 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 LAD1O00515 517 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 BCRP11274 1271 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 PRPHP41219 470 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 MRPS9P82933 396 aaKnown RBP12.18□□□□□ -0.46
MSX1-202ENST00000468421 SKOR2Q2VWA4 1001 aaPredicted RBP12.18□□□□□ -0.46
MSX1-202ENST00000468421 Q4G0T1 1027 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 PRR16Q569H4 304 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 WDR78Q5VTH9 848 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 PCNX4Q63HM2 1172 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 USP49Q70CQ1 688 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 ZNF579Q8NAF0 562 aaKnown RBP12.18□□□□□ -0.46
MSX1-202ENST00000468421 ETNPPLQ8TBG4 499 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 HAS1Q92839 578 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 FGD4Q96M96 766 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 UIMC1Q96RL1 719 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 MROH8Q9H579 483 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 KCNMB3Q9NPA1 279 aa12.18□□□□□ -0.46
MSX1-202ENST00000468421 FAM237AA0A1B0GTK4 181 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 SOWAHBA6NEL2 793 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 POTEB2H3BUK9 544 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 NR1I2O75469 434 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 PFKFB1P16118 471 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 HSPA6P17066 643 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 CMA1P23946 247 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 ZNF76P36508 570 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 NDUFA8P51970 172 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 CCNA1P78396 465 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 HTRA3P83110 453 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 NOGQ13253 232 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 CRHR2Q13324 411 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 ARHGEF16Q5VV41 709 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 CAVIN1Q6NZI2 390 aaKnown RBP12.17□□□□□ -0.46
MSX1-202ENST00000468421 PLA2G4DQ86XP0 818 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 FAM133AQ8N9E0 248 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 ENGASEQ8NFI3 743 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 MMP19Q99542 508 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 MXRA8Q9BRK3 442 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 TMEM63CQ9P1W3 806 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 HPSEQ9Y251 543 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 UBIAD1Q9Y5Z9 338 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 WDR81Q562E7 1941 aa12.17□□□□□ -0.46
MSX1-202ENST00000468421 DNAJC25-GNG10A0A024R161 153 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 PP2D1A8MPX8 630 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 MSH4O15457 936 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 TLR2O60603 784 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 PGK2P07205 417 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 NR3C2P08235 984 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 ARP10275 920 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 MYCLP12524 364 aaPredicted RBP12.16□□□□□ -0.46
MSX1-202ENST00000468421 ITGB5P18084 799 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 TXKP42681 527 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 ALDH5A1P51649 535 aaPredicted RBP12.16□□□□□ -0.46
MSX1-202ENST00000468421 SNW1Q13573 536 aaKnown RBP12.16□□□□□ -0.46
MSX1-202ENST00000468421 CEP55Q53EZ4 464 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 C17orf99Q6UX52 265 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 DTHD1Q6ZMT9 781 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 CCDC73Q6ZRK6 1079 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 FMR1NBQ8N0W7 255 aaPredicted RBP12.16□□□□□ -0.46
MSX1-202ENST00000468421 NSUN6Q8TEA1 469 aaKnown RBP12.16□□□□□ -0.46
MSX1-202ENST00000468421 SYMPKQ92797 1274 aaKnown RBP12.16□□□□□ -0.46
MSX1-202ENST00000468421 EPSTI1Q96J88 318 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 ZFYVE28Q9HCC9 887 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 DACT1Q9NYF0 836 aa12.16□□□□□ -0.46
MSX1-202ENST00000468421 A0A087X0B3 334 aa12.15□□□□□ -0.46
MSX1-202ENST00000468421 POTEMA6NI47 508 aa12.15□□□□□ -0.46
MSX1-202ENST00000468421 MEIS1O00470 390 aa12.15□□□□□ -0.46
MSX1-202ENST00000468421 FCER1AP12319 257 aa12.15□□□□□ -0.46
MSX1-202ENST00000468421 CCND2P30279 289 aa12.15□□□□□ -0.46
MSX1-202ENST00000468421 CDC25AP30304 524 aa12.15□□□□□ -0.46
MSX1-202ENST00000468421 LONP1P36776 959 aaKnown RBP12.15□□□□□ -0.46
MSX1-202ENST00000468421 TECP42680 631 aa12.15□□□□□ -0.46
MSX1-202ENST00000468421 FXR2P51116 673 aaKnown RBP eCLIP12.15□□□□□ -0.46
MSX1-202ENST00000468421 FAM160A1Q05DH4 1040 aa12.15□□□□□ -0.46
MSX1-202ENST00000468421 KCTD2Q14681 263 aa12.15□□□□□ -0.46
MSX1-202ENST00000468421 GPR142Q7Z601 462 aa12.15□□□□□ -0.46
MSX1-202ENST00000468421 VSIG10LQ86VR7 867 aa12.15□□□□□ -0.46
MSX1-202ENST00000468421 DNERQ8NFT8 737 aa12.15□□□□□ -0.46
MSX1-202ENST00000468421 WDR11Q9BZH6 1224 aa12.15□□□□□ -0.46
MSX1-202ENST00000468421 JADE2Q9NQC1 790 aa12.15□□□□□ -0.46
MSX1-202ENST00000468421 TBX3O15119 743 aa12.14□□□□□ -0.47
MSX1-202ENST00000468421 CA12O43570 354 aa12.14□□□□□ -0.47
MSX1-202ENST00000468421 COBLO75128 1261 aa12.14□□□□□ -0.47
MSX1-202ENST00000468421 RGS20O76081 388 aa12.14□□□□□ -0.47
MSX1-202ENST00000468421 ECM2O94769 699 aaPredicted RBP12.14□□□□□ -0.47
MSX1-202ENST00000468421 EDNRBP24530 442 aa12.14□□□□□ -0.47
MSX1-202ENST00000468421 ADORA2AP29274 412 aa12.14□□□□□ -0.47
MSX1-202ENST00000468421 VEGFBP49765 207 aa12.14□□□□□ -0.47
MSX1-202ENST00000468421 SETQ01105 290 aaPredicted RBP12.14□□□□□ -0.47
MSX1-202ENST00000468421 SEMA3FQ13275 785 aa12.14□□□□□ -0.47
MSX1-202ENST00000468421 NIPA1Q7RTP0 329 aa12.14□□□□□ -0.47
MSX1-202ENST00000468421 IGSF22Q8N9C0 903 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms