RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SMPD1P17405 629 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 KCNJ6P48051 423 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 PTPN5P54829 565 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 ERVK-21P61565 698 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 CNTN2Q02246 1040 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 IKQ13123 557 aaPredicted RBP13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 TSGA10IPQ3SY00 556 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 CCDC178Q5BJE1 867 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 IQSEC1Q6DN90 963 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 CYB5R4Q7L1T6 521 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 RETREG2Q8NC44 543 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 PRSS33Q8NF86 280 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 TTC14Q96N46 770 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 TGS1Q96RS0 853 aaKnown RBP13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 ZSCAN10Q96SZ4 725 aaPredicted RBP13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 ZKSCAN3Q9BRR0 538 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 ZBED2Q9BTP6 218 aa13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 ISY1Q9ULR0 285 aaKnown RBP13.89□□□□□ -0.19
SQSTM1-206ENST00000466342 CACNA1AO00555 2505 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 ASB14A6NK59 587 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 PITPNM1O00562 1244 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 TOP1P11387 765 aaKnown RBP13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 ZP2Q05996 745 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 TKFCQ3LXA3 575 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 DGKHQ86XP1 1220 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 MB21D2Q8IYB1 491 aaPredicted RBP13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 FAM133AQ8N9E0 248 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 DCAF4Q8WV16 495 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 KCNB2Q92953 911 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 PRRX2Q99811 253 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 UBAC1Q9BSL1 405 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 USP26Q9BXU7 913 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 MTUS1Q9ULD2 1270 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 FAM50BQ9Y247 325 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 SCN10AQ9Y5Y9 1956 aa13.88□□□□□ -0.19
SQSTM1-206ENST00000466342 ZDBF2Q9HCK1 2354 aa13.87□□□□□ -0.19
SQSTM1-206ENST00000466342 PTGS1P23219 599 aa13.87□□□□□ -0.19
SQSTM1-206ENST00000466342 KRT32Q14532 448 aa13.87□□□□□ -0.19
SQSTM1-206ENST00000466342 C8orf34Q49A92 452 aa13.87□□□□□ -0.19
SQSTM1-206ENST00000466342 KCTD1Q719H9 257 aa13.87□□□□□ -0.19
SQSTM1-206ENST00000466342 RASEFQ8IZ41 740 aa13.87□□□□□ -0.19
SQSTM1-206ENST00000466342 TMEM47Q9BQJ4 181 aa13.87□□□□□ -0.19
SQSTM1-206ENST00000466342 PDGFCQ9NRA1 345 aa13.87□□□□□ -0.19
SQSTM1-206ENST00000466342 POLR3EQ9NVU0 708 aa13.87□□□□□ -0.19
SQSTM1-206ENST00000466342 PRR12Q9ULL5 1215 aa13.87□□□□□ -0.19
SQSTM1-206ENST00000466342 TECTAO75443 2155 aa13.87□□□□□ -0.19
SQSTM1-206ENST00000466342 LINC01553A4QN01 128 aa13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 SOWAHBA6NEL2 793 aa13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 H3BQ06 376 aaPredicted RBP13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 MCM5P33992 734 aa13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 ANTXR2P58335 489 aa13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 WDR5P61964 334 aaKnown RBP13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 SEC23AQ15436 765 aa13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 TAPT1Q6NXT6 567 aa13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 BTNL9Q6UXG8 535 aa13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 BMP8AQ7Z5Y6 402 aa13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 TMCO2Q7Z6W1 182 aaPredicted RBP13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 ADHFE1Q8IWW8 467 aa13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 ENAHQ8N8S7 591 aaPredicted RBP13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 RAD9AQ99638 391 aa13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 MTA3Q9BTC8 594 aa13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 ACAD9Q9H845 621 aa13.86□□□□□ -0.19
SQSTM1-206ENST00000466342 GFRA3O60609 400 aa13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 GJB5O95377 273 aa13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 IRS1P35568 1242 aa13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 PURAQ00577 322 aaKnown RBP13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 BFSP2Q13515 415 aa13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 SART3Q15020 963 aaKnown RBP13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 CCDC96Q2M329 555 aa13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 ADCK5Q3MIX3 580 aa13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 TMEM63BQ5T3F8 832 aa13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 IER5LQ5T953 404 aa13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 CHST3Q7LGC8 479 aa13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 CHMP4CQ96CF2 233 aa13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 NEK1Q96PY6 1258 aa13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 SNX14Q9Y5W7 946 aa13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 MYH6P13533 1939 aa13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 SPTBN4Q9H254 2564 aa13.85□□□□□ -0.19
SQSTM1-206ENST00000466342 ERICH2A1L162 156 aa13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 IFIT3O14879 490 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 PRC1O43663 620 aa13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 COL9A3Q14050 684 aaPredicted RBP13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 PKN1Q16512 942 aa13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 NBPF20Q3BBV1 942 aa13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 HERC4Q5GLZ8 1057 aaPredicted RBP13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 FAM47CQ5HY64 1035 aa13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 IFIT1BQ5T764 474 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 PNMA1Q8ND90 353 aa13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 PABPC5Q96DU9 382 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 MRPL38Q96DV4 380 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 TMEM87BQ96K49 555 aa13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 TRERF1Q96PN7 1200 aa13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 MTG1Q9BT17 334 aaPredicted RBP13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 KAT14Q9H8E8 782 aa13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 HOMER2Q9NSB8 354 aa13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 RNF146Q9NTX7 359 aa13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 PNMA2Q9UL42 364 aa13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 MTMR7Q9Y216 660 aa13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 KMT2EQ8IZD2 1858 aa13.84□□□□□ -0.19
SQSTM1-206ENST00000466342 WDR19Q8NEZ3 1342 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms