RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 FBXO11Q86XK2 927 aa26.41■■□□□ 1.82
USP4-208ENST00000464168 HERC6Q8IVU3 1022 aa26.41■■□□□ 1.82
USP4-208ENST00000464168 DSCC1Q9BVC3 393 aa26.41■■□□□ 1.82
USP4-208ENST00000464168 TSPYL2Q9H2G4 693 aaPredicted RBP26.41■■□□□ 1.82
USP4-208ENST00000464168 MRPL11Q9Y3B7 192 aaKnown RBP26.41■■□□□ 1.82
USP4-208ENST00000464168 EPOPA6NHQ4 379 aa26.4■■□□□ 1.82
USP4-208ENST00000464168 ARHGEF15O94989 841 aa26.4■■□□□ 1.82
USP4-208ENST00000464168 GPNMBQ14956 572 aa26.4■■□□□ 1.82
USP4-208ENST00000464168 CAGE1Q8TC20 777 aa26.4■■□□□ 1.82
USP4-208ENST00000464168 UHRF1Q96T88 793 aaPredicted RBP26.4■■□□□ 1.82
USP4-208ENST00000464168 DDX41Q9UJV9 622 aaKnown RBP26.4■■□□□ 1.82
USP4-208ENST00000464168 MTCH2Q9Y6C9 303 aa26.4■■□□□ 1.82
USP4-208ENST00000464168 DHX16O60231 1041 aaKnown RBP26.39■■□□□ 1.82
USP4-208ENST00000464168 EIF3JO75822 258 aaKnown RBP26.39■■□□□ 1.82
USP4-208ENST00000464168 EIF2AK2P19525 551 aaKnown RBP26.39■■□□□ 1.82
USP4-208ENST00000464168 CASTP20810 708 aaKnown RBP26.39■■□□□ 1.82
USP4-208ENST00000464168 TAP1Q03518 808 aa26.39■■□□□ 1.82
USP4-208ENST00000464168 IMMTQ16891 758 aaKnown RBP26.39■■□□□ 1.82
USP4-208ENST00000464168 ARHGEF16Q5VV41 709 aa26.39■■□□□ 1.82
USP4-208ENST00000464168 AFAP1L1Q8TED9 768 aa26.39■■□□□ 1.82
USP4-208ENST00000464168 DHX38Q92620 1227 aaKnown RBP26.39■■□□□ 1.82
USP4-208ENST00000464168 HIP1O00291 1037 aa26.38■■□□□ 1.81
USP4-208ENST00000464168 OPLAHO14841 1288 aa26.38■■□□□ 1.81
USP4-208ENST00000464168 BAIAP3O94812 1187 aa26.38■■□□□ 1.81
USP4-208ENST00000464168 NR3C2P08235 984 aa26.38■■□□□ 1.81
USP4-208ENST00000464168 TFF2Q03403 129 aa26.38■■□□□ 1.81
USP4-208ENST00000464168 DGKDQ16760 1214 aa26.38■■□□□ 1.81
USP4-208ENST00000464168 CCDC155Q8N6L0 562 aa26.38■■□□□ 1.81
USP4-208ENST00000464168 EMID1Q96A84 441 aaPredicted RBP26.38■■□□□ 1.81
USP4-208ENST00000464168 KRT23Q9C075 422 aa26.38■■□□□ 1.81
USP4-208ENST00000464168 CTNNA3Q9UI47 895 aa26.38■■□□□ 1.81
USP4-208ENST00000464168 KIF28PB7ZC32 967 aa26.37■■□□□ 1.81
USP4-208ENST00000464168 BMP1P13497 986 aa26.37■■□□□ 1.81
USP4-208ENST00000464168 STAG2Q8N3U4 1231 aa26.37■■□□□ 1.81
USP4-208ENST00000464168 IL27Q8NEV9 243 aa26.37■■□□□ 1.81
USP4-208ENST00000464168 PXMP2Q9NR77 195 aa26.37■■□□□ 1.81
USP4-208ENST00000464168 GTPBP6O43824 516 aaPredicted RBP26.36■■□□□ 1.81
USP4-208ENST00000464168 CFBP00751 764 aa26.36■■□□□ 1.81
USP4-208ENST00000464168 SELPP16109 830 aa26.36■■□□□ 1.81
USP4-208ENST00000464168 HSD17B4P51659 736 aa26.36■■□□□ 1.81
USP4-208ENST00000464168 RBL2Q08999 1139 aa26.36■■□□□ 1.81
USP4-208ENST00000464168 KRT40Q6A162 431 aa26.36■■□□□ 1.81
USP4-208ENST00000464168 ARNTL2Q8WYA1 636 aa26.36■■□□□ 1.81
USP4-208ENST00000464168 UBAC1Q9BSL1 405 aa26.36■■□□□ 1.81
USP4-208ENST00000464168 HDAC6Q9UBN7 1215 aa26.36■■□□□ 1.81
USP4-208ENST00000464168 GTF2IRD1Q9UHL9 959 aa26.36■■□□□ 1.81
USP4-208ENST00000464168 LAMA4Q16363 1823 aa26.36■■□□□ 1.81
USP4-208ENST00000464168 TANC1Q9C0D5 1861 aa26.36■■□□□ 1.81
USP4-208ENST00000464168 TRIP12Q14669 1992 aaPredicted RBP26.35■■□□□ 1.81
USP4-208ENST00000464168 GHRHRQ02643 423 aa26.35■■□□□ 1.81
USP4-208ENST00000464168 LRRC8DQ7L1W4 858 aa26.35■■□□□ 1.81
USP4-208ENST00000464168 MTMR8Q96EF0 704 aa26.35■■□□□ 1.81
USP4-208ENST00000464168 AMNQ9BXJ7 453 aa26.35■■□□□ 1.81
USP4-208ENST00000464168 CNNM2Q9H8M5 875 aa26.35■■□□□ 1.81
USP4-208ENST00000464168 MRVI1Q9Y6F6 885 aa26.35■■□□□ 1.81
USP4-208ENST00000464168 PPP1R11O60927 126 aaPredicted RBP26.34■■□□□ 1.81
USP4-208ENST00000464168 CKBP12277 381 aa26.34■■□□□ 1.81
USP4-208ENST00000464168 PSEN2P49810 448 aa26.34■■□□□ 1.81
USP4-208ENST00000464168 WDR5P61964 334 aaKnown RBP26.34■■□□□ 1.81
USP4-208ENST00000464168 LAMC2Q13753 1193 aa26.34■■□□□ 1.81
USP4-208ENST00000464168 SEC23AQ15436 765 aa26.34■■□□□ 1.81
USP4-208ENST00000464168 SKIV2LQ15477 1246 aaKnown RBP26.34■■□□□ 1.81
USP4-208ENST00000464168 IFIT1BQ5T764 474 aaKnown RBP26.34■■□□□ 1.81
USP4-208ENST00000464168 C7orf31Q8N865 590 aa26.34■■□□□ 1.81
USP4-208ENST00000464168 PPTC7Q8NI37 304 aa26.34■■□□□ 1.81
USP4-208ENST00000464168 NECAB3Q96P71 396 aaPredicted RBP26.34■■□□□ 1.81
USP4-208ENST00000464168 ALG1Q9BT22 464 aa26.34■■□□□ 1.81
USP4-208ENST00000464168 IL25Q9H293 177 aa26.34■■□□□ 1.81
USP4-208ENST00000464168 KLRF2D3W0D1 207 aa26.33■■□□□ 1.81
USP4-208ENST00000464168 HAS3O00219 553 aa26.33■■□□□ 1.81
USP4-208ENST00000464168 TLL1O43897 1013 aa26.33■■□□□ 1.81
USP4-208ENST00000464168 NBNO60934 754 aa26.33■■□□□ 1.81
USP4-208ENST00000464168 RGS20O76081 388 aa26.33■■□□□ 1.81
USP4-208ENST00000464168 F2P00734 622 aa26.33■■□□□ 1.81
USP4-208ENST00000464168 CXCL10P02778 98 aa26.33■■□□□ 1.81
USP4-208ENST00000464168 COL9A1P20849 921 aa26.33■■□□□ 1.81
USP4-208ENST00000464168 KCNJ6P48051 423 aa26.33■■□□□ 1.81
USP4-208ENST00000464168 SPRED2Q7Z698 418 aa26.33■■□□□ 1.81
USP4-208ENST00000464168 TMCO2Q7Z6W1 182 aaPredicted RBP26.33■■□□□ 1.81
USP4-208ENST00000464168 DHX37Q8IY37 1157 aaKnown RBP26.33■■□□□ 1.81
USP4-208ENST00000464168 PDCD2LQ9BRP1 358 aa26.33■■□□□ 1.81
USP4-208ENST00000464168 KIAA1217Q5T5P2 1943 aa26.32■■□□□ 1.8
USP4-208ENST00000464168 PARNO95453 639 aaKnown RBP26.32■■□□□ 1.8
USP4-208ENST00000464168 ZNF286BP0CG31 522 aa26.32■■□□□ 1.8
USP4-208ENST00000464168 HOXD8P13378 290 aaPredicted RBP26.32■■□□□ 1.8
USP4-208ENST00000464168 KCNQ1P51787 676 aa26.32■■□□□ 1.8
USP4-208ENST00000464168 MFSD10Q14728 455 aa26.32■■□□□ 1.8
USP4-208ENST00000464168 KIAA0753Q2KHM9 967 aa26.32■■□□□ 1.8
USP4-208ENST00000464168 AAK1Q2M2I8 961 aa26.32■■□□□ 1.8
USP4-208ENST00000464168 TCTN1Q2MV58 587 aa26.32■■□□□ 1.8
USP4-208ENST00000464168 CNKSR3Q6P9H4 555 aa26.32■■□□□ 1.8
USP4-208ENST00000464168 STOX1Q6ZVD7 989 aa26.32■■□□□ 1.8
USP4-208ENST00000464168 KATNAL1Q9BW62 490 aa26.32■■□□□ 1.8
USP4-208ENST00000464168 MAD2L2Q9UI95 211 aa26.32■■□□□ 1.8
USP4-208ENST00000464168 LCHNA4D1U4 455 aa26.31■■□□□ 1.8
USP4-208ENST00000464168 ZBTB5O15062 677 aa26.31■■□□□ 1.8
USP4-208ENST00000464168 DEFB103AP81534 67 aa26.31■■□□□ 1.8
USP4-208ENST00000464168 PTK7Q13308 1070 aa26.31■■□□□ 1.8
USP4-208ENST00000464168 GRB10Q13322 594 aa26.31■■□□□ 1.8
USP4-208ENST00000464168 TRIM71Q2Q1W2 868 aaKnown RBP26.31■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms