RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 CALM2P0DP24 149 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 CALM3P0DP25 149 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 EIF2AK2P19525 551 aaKnown RBP8.43□□□□□ -1.06
PTPRF-210ENST00000463041 DGKDQ16760 1214 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 SLC35G1Q2M3R5 365 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 TSGA10IPQ3SY00 556 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 RASIP1Q5U651 963 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 PSRC1Q6PGN9 363 aaPredicted RBP8.43□□□□□ -1.06
PTPRF-210ENST00000463041 NFXL1Q6ZNB6 911 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 ZNF365Q70YC5 407 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 HOMER1Q86YM7 354 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 DHX37Q8IY37 1157 aaKnown RBP8.43□□□□□ -1.06
PTPRF-210ENST00000463041 ZNF654Q8IZM8 581 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 SLC17A8Q8NDX2 589 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 AFG1LQ8WV93 481 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 EMID1Q96A84 441 aaPredicted RBP8.43□□□□□ -1.06
PTPRF-210ENST00000463041 RRP36Q96EU6 259 aaKnown RBP8.43□□□□□ -1.06
PTPRF-210ENST00000463041 PDCD2LQ9BRP1 358 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 NOC4LQ9BVI4 516 aaKnown RBP8.43□□□□□ -1.06
PTPRF-210ENST00000463041 SPZ1Q9BXG8 430 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 PPP1R12CQ9BZL4 782 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 MTIF3Q9H2K0 278 aaKnown RBP8.43□□□□□ -1.06
PTPRF-210ENST00000463041 ANO2Q9NQ90 1003 aa8.43□□□□□ -1.06
PTPRF-210ENST00000463041 SH2B2O14492 632 aaPredicted RBP8.42□□□□□ -1.06
PTPRF-210ENST00000463041 STAM2O75886 525 aa8.42□□□□□ -1.06
PTPRF-210ENST00000463041 MYCLP12524 364 aaPredicted RBP8.42□□□□□ -1.06
PTPRF-210ENST00000463041 CCND2P30279 289 aa8.42□□□□□ -1.06
PTPRF-210ENST00000463041 HOXA13P31271 388 aaPredicted RBP8.42□□□□□ -1.06
PTPRF-210ENST00000463041 ARHGAP1Q07960 439 aa8.42□□□□□ -1.06
PTPRF-210ENST00000463041 PGM5Q15124 567 aa8.42□□□□□ -1.06
PTPRF-210ENST00000463041 FAM47CQ5HY64 1035 aa8.42□□□□□ -1.06
PTPRF-210ENST00000463041 SYNE3Q6ZMZ3 975 aa8.42□□□□□ -1.06
PTPRF-210ENST00000463041 RETREG2Q8NC44 543 aa8.42□□□□□ -1.06
PTPRF-210ENST00000463041 HERVK_113Q902F9 699 aa8.42□□□□□ -1.06
PTPRF-210ENST00000463041 SLC12A7Q9Y666 1083 aa8.42□□□□□ -1.06
PTPRF-210ENST00000463041 MRVI1Q9Y6F6 885 aa8.42□□□□□ -1.06
PTPRF-210ENST00000463041 PRUNE2Q8WUY3 3088 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 TET1Q8NFU7 2136 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 RGS20O76081 388 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 PFKMP08237 780 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 MMP3P08254 477 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 ACRP10323 421 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 CYP2C9P11712 490 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 RFC2P35250 354 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 CCL23P55773 120 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 EXOSC10Q01780 885 aaKnown RBP8.41□□□□□ -1.06
PTPRF-210ENST00000463041 BFSP2Q13515 415 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 KRT32Q14532 448 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 CELF3Q5SZQ8 465 aaKnown RBP8.41□□□□□ -1.06
PTPRF-210ENST00000463041 MYSM1Q5VVJ2 828 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 XRRA1Q6P2D8 792 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 DHX32Q7L7V1 743 aaKnown RBP8.41□□□□□ -1.06
PTPRF-210ENST00000463041 SESTD1Q86VW0 696 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 SGMS1Q86VZ5 419 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 FCHSD1Q86WN1 690 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 SRBD1Q8N5C6 995 aaKnown RBP8.41□□□□□ -1.06
PTPRF-210ENST00000463041 FANCBQ8NB91 859 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 PPTC7Q8NI37 304 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 CUL5Q93034 780 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 FAM161BQ96MY7 647 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 GUCD1Q96NT3 240 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 NEK1Q96PY6 1258 aa8.41□□□□□ -1.06
PTPRF-210ENST00000463041 TRMT13Q9NUP7 481 aaKnown RBP8.41□□□□□ -1.06
PTPRF-210ENST00000463041 SEC63Q9UGP8 760 aaKnown RBP8.41□□□□□ -1.06
PTPRF-210ENST00000463041 UMODL1Q5DID0 1318 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 PIK3CDO00329 1044 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 PITPNM1O00562 1244 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 CDC45O75419 566 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 PARNO95453 639 aaKnown RBP8.4□□□□□ -1.06
PTPRF-210ENST00000463041 HMGB1P09429 215 aaKnown RBP8.4□□□□□ -1.06
PTPRF-210ENST00000463041 DNAJB2P25686 324 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 ICAM3P32942 547 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 NEDD9Q14511 834 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 GNPTABQ3T906 1256 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 SMARCC2Q8TAQ2 1214 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 PIBF1Q8WXW3 757 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 KAT2BQ92831 832 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 CCDC136Q96JN2 1154 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 CDX2Q99626 313 aaPredicted RBP8.4□□□□□ -1.06
PTPRF-210ENST00000463041 MYL10Q9BUA6 226 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 KATNAL1Q9BW62 490 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 WNT8AQ9H1J5 351 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 TTYH1Q9H313 450 aaPredicted RBP8.4□□□□□ -1.06
PTPRF-210ENST00000463041 PSTPIP2Q9H939 334 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 MLXIPQ9HAP2 919 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 MSRAQ9UJ68 235 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 NOD1Q9Y239 953 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 SCN5AQ14524 2016 aa8.4□□□□□ -1.06
PTPRF-210ENST00000463041 FRMPD4Q14CM0 1322 aa8.39□□□□□ -1.07
PTPRF-210ENST00000463041 SPATA31C2B4DYI2 1134 aa8.39□□□□□ -1.07
PTPRF-210ENST00000463041 HAS3O00219 553 aa8.39□□□□□ -1.07
PTPRF-210ENST00000463041 MEIS2O14770 477 aa8.39□□□□□ -1.07
PTPRF-210ENST00000463041 PLEKHA8P1O95397 391 aa8.39□□□□□ -1.07
PTPRF-210ENST00000463041 GGPS1O95749 300 aa8.39□□□□□ -1.07
PTPRF-210ENST00000463041 IQCF3P0C7M6 154 aa8.39□□□□□ -1.07
PTPRF-210ENST00000463041 ACTN1P12814 892 aa8.39□□□□□ -1.07
PTPRF-210ENST00000463041 HOXD8P13378 290 aaPredicted RBP8.39□□□□□ -1.07
PTPRF-210ENST00000463041 PSEN2P49810 448 aa8.39□□□□□ -1.07
PTPRF-210ENST00000463041 CHMP4BP1P59074 171 aa8.39□□□□□ -1.07
PTPRF-210ENST00000463041 MRPS9P82933 396 aaKnown RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms