RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 MYO1AQ9UBC5 1043 aa13.8□□□□□ -0.2
HDAC4-208ENST00000463007 PLIN4Q96Q06 1357 aa13.8□□□□□ -0.2
HDAC4-208ENST00000463007 ITIH6Q6UXX5 1313 aa13.8□□□□□ -0.2
HDAC4-208ENST00000463007 SHTN1A0MZ66 631 aa13.8□□□□□ -0.2
HDAC4-208ENST00000463007 EIF4A3P38919 411 aaKnown RBP13.8□□□□□ -0.2
HDAC4-208ENST00000463007 CKAP4Q07065 602 aaKnown RBP13.8□□□□□ -0.2
HDAC4-208ENST00000463007 C16orf86Q6ZW13 317 aa13.8□□□□□ -0.2
HDAC4-208ENST00000463007 BLIDQ8IZY5 108 aa13.8□□□□□ -0.2
HDAC4-208ENST00000463007 BCCIPQ9P287 314 aaKnown RBP eCLIP13.8□□□□□ -0.2
HDAC4-208ENST00000463007 USP17L3A6NCW0 530 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 USP17L4A6NCW7 530 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 LRRC10BA6NIK2 292 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 PLCG1P19174 1290 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 GUCY1A3Q02108 690 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 TRIM14Q14142 442 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 USP17L1Q7RTZ2 530 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 LRRC15Q8TF66 581 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.79□□□□□ -0.2
HDAC4-208ENST00000463007 GOLPH3Q9H4A6 298 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 CAPN11Q9UMQ6 739 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 NFU1Q9UMS0 254 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 SIPA1L1O43166 1804 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 AFF2P51816 1311 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 FTCDO95954 541 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 KIF5BP33176 963 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 GFPT1Q06210 699 aaPredicted RBP13.79□□□□□ -0.2
HDAC4-208ENST00000463007 NAALADL2Q58DX5 795 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 SLC44A5Q8NCS7 719 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 KAT2BQ92831 832 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 POLLQ9UGP5 575 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 CAPN7Q9Y6W3 813 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 POLRMTO00411 1230 aaKnown RBP13.79□□□□□ -0.2
HDAC4-208ENST00000463007 CCNT1O60563 726 aaKnown RBP13.79□□□□□ -0.2
HDAC4-208ENST00000463007 ATP2B4P23634 1241 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 DNM2P50570 870 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 ARL6IP4Q66PJ3 421 aaKnown RBP13.79□□□□□ -0.2
HDAC4-208ENST00000463007 CACNA2D4Q7Z3S7 1137 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 SEPT12Q8IYM1 358 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 SPATA4Q8NEY3 305 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 GJA10Q969M2 543 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 EFCC1Q9HA90 598 aa13.79□□□□□ -0.2
HDAC4-208ENST00000463007 TACC1O75410 805 aa13.78□□□□□ -0.2
HDAC4-208ENST00000463007 SEC24CP53992 1094 aa13.78□□□□□ -0.2
HDAC4-208ENST00000463007 PCDHA4Q9UN74 947 aa13.78□□□□□ -0.2
HDAC4-208ENST00000463007 FLT1P17948 1338 aa13.78□□□□□ -0.2
HDAC4-208ENST00000463007 MYO1FO00160 1098 aa13.78□□□□□ -0.2
HDAC4-208ENST00000463007 USO1O60763 962 aaKnown RBP13.78□□□□□ -0.2
HDAC4-208ENST00000463007 SERPINB2P05120 415 aa13.78□□□□□ -0.2
HDAC4-208ENST00000463007 TXKP42681 527 aa13.78□□□□□ -0.2
HDAC4-208ENST00000463007 GUCY2DQ02846 1103 aa13.78□□□□□ -0.2
HDAC4-208ENST00000463007 TXNRD1Q16881 649 aa13.78□□□□□ -0.2
HDAC4-208ENST00000463007 SLC27A3Q5K4L6 730 aa13.78□□□□□ -0.2
HDAC4-208ENST00000463007 C8orf74Q6P047 294 aa13.78□□□□□ -0.2
HDAC4-208ENST00000463007 MAATS1Q7Z4T9 603 aa13.78□□□□□ -0.2
HDAC4-208ENST00000463007 KLHL7Q8IXQ5 586 aa13.78□□□□□ -0.2
HDAC4-208ENST00000463007 TGFBRAP1Q8WUH2 860 aa13.78□□□□□ -0.2
HDAC4-208ENST00000463007 CCDC43Q96MW1 224 aaKnown RBP13.78□□□□□ -0.2
HDAC4-208ENST00000463007 RBM12Q9NTZ6 932 aaKnown RBP13.78□□□□□ -0.2
HDAC4-208ENST00000463007 RASSF10A6NK89 507 aa13.77□□□□□ -0.2
HDAC4-208ENST00000463007 STXBP3O00186 592 aa13.77□□□□□ -0.2
HDAC4-208ENST00000463007 FAM153BP0C7A2 387 aa13.77□□□□□ -0.2
HDAC4-208ENST00000463007 HLTFQ14527 1009 aaKnown RBP eCLIP13.77□□□□□ -0.2
HDAC4-208ENST00000463007 FAM153CQ494X1 144 aa13.77□□□□□ -0.2
HDAC4-208ENST00000463007 TBC1D16Q8TBP0 767 aa13.77□□□□□ -0.2
HDAC4-208ENST00000463007 CRAMP1Q96RY5 1269 aa13.77□□□□□ -0.2
HDAC4-208ENST00000463007 DNAJC7Q99615 494 aa13.77□□□□□ -0.2
HDAC4-208ENST00000463007 TMEM47Q9BQJ4 181 aa13.77□□□□□ -0.2
HDAC4-208ENST00000463007 ZHX3Q9H4I2 956 aa13.77□□□□□ -0.2
HDAC4-208ENST00000463007 EPB41L5Q9HCM4 733 aa13.77□□□□□ -0.2
HDAC4-208ENST00000463007 FAM153AQ9UHL3 310 aa13.77□□□□□ -0.2
HDAC4-208ENST00000463007 SALL4Q9UJQ4 1053 aa13.77□□□□□ -0.2
HDAC4-208ENST00000463007 HSF2BPO75031 334 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 BAG3O95817 575 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 INPP5BP32019 993 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 PAFAH1B1P43034 410 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 MAGEA1P43355 309 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 CARSP49589 748 aaKnown RBP13.77□□□□□ -0.21
HDAC4-208ENST00000463007 KIF11P52732 1056 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 PAPD7Q5XG87 772 aaKnown RBP13.77□□□□□ -0.21
HDAC4-208ENST00000463007 CREG2Q8IUH2 290 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 DUSP9Q99956 384 aaKnown RBP13.77□□□□□ -0.21
HDAC4-208ENST00000463007 SAP30BPQ9UHR5 308 aaKnown RBP13.77□□□□□ -0.21
HDAC4-208ENST00000463007 FAM184BQ9ULE4 1060 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 PCDHA13Q9Y5I0 950 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 RAD21O60216 631 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 MCM3P25205 808 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 CALML3P27482 149 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 BTDP43251 543 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 GLIS3Q8NEA6 775 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 OSBPL9Q96SU4 736 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 SPZ1Q9BXG8 430 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 MKNK2Q9HBH9 465 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 PPANQ9NQ55 473 aaKnown RBP13.77□□□□□ -0.21
HDAC4-208ENST00000463007 BARHL2Q9NY43 387 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 PCDHA6Q9UN73 950 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 PCDHA8Q9Y5H6 950 aa13.77□□□□□ -0.21
HDAC4-208ENST00000463007 LRRC53A6NM62 1247 aa13.76□□□□□ -0.21
HDAC4-208ENST00000463007 BBOX1O75936 387 aa13.76□□□□□ -0.21
HDAC4-208ENST00000463007 UFL1O94874 794 aa13.76□□□□□ -0.21
HDAC4-208ENST00000463007 CABP7Q86V35 215 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms