RNA–Protein interactions for RNA: ENST00000455111.1

GPC1-206, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 841 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-206ENST00000455111 MUC3AQ02505 3323 aa18.71■□□□□ 0.58
GPC1-206ENST00000455111 COL4A4P53420 1690 aaPredicted RBP18.7■□□□□ 0.58
GPC1-206ENST00000455111 TRANK1O15050 2925 aa18.7■□□□□ 0.58
GPC1-206ENST00000455111 SGSM2O43147 1006 aa18.7■□□□□ 0.58
GPC1-206ENST00000455111 CFBP00751 764 aa18.7■□□□□ 0.58
GPC1-206ENST00000455111 NR3C2P08235 984 aa18.7■□□□□ 0.58
GPC1-206ENST00000455111 HOXA13P31271 388 aaPredicted RBP18.7■□□□□ 0.58
GPC1-206ENST00000455111 SP2Q02086 613 aa18.7■□□□□ 0.58
GPC1-206ENST00000455111 TROAPQ12815 778 aa18.7■□□□□ 0.58
GPC1-206ENST00000455111 FAM47CQ5HY64 1035 aa18.7■□□□□ 0.58
GPC1-206ENST00000455111 WNT8BQ93098 351 aa18.7■□□□□ 0.58
GPC1-206ENST00000455111 PIGSQ96S52 555 aa18.7■□□□□ 0.58
GPC1-206ENST00000455111 PDCD2LQ9BRP1 358 aa18.7■□□□□ 0.58
GPC1-206ENST00000455111 UBAC1Q9BSL1 405 aa18.7■□□□□ 0.58
GPC1-206ENST00000455111 RIOX1Q9H6W3 641 aa18.7■□□□□ 0.58
GPC1-206ENST00000455111 MRPL11Q9Y3B7 192 aaKnown RBP18.7■□□□□ 0.58
GPC1-206ENST00000455111 E7EWF7 191 aa18.69■□□□□ 0.58
GPC1-206ENST00000455111 ZBTB5O15062 677 aa18.69■□□□□ 0.58
GPC1-206ENST00000455111 PTPN11Q06124 597 aaPredicted RBP18.69■□□□□ 0.58
GPC1-206ENST00000455111 STXBP2Q15833 593 aa18.69■□□□□ 0.58
GPC1-206ENST00000455111 TRAF7Q6Q0C0 670 aa18.69■□□□□ 0.58
GPC1-206ENST00000455111 SPRED2Q7Z698 418 aa18.69■□□□□ 0.58
GPC1-206ENST00000455111 IWS1Q96ST2 819 aa18.69■□□□□ 0.58
GPC1-206ENST00000455111 AMNQ9BXJ7 453 aa18.69■□□□□ 0.58
GPC1-206ENST00000455111 XIRP2A4UGR9 3374 aa18.68■□□□□ 0.58
GPC1-206ENST00000455111 EPOPA6NHQ4 379 aa18.68■□□□□ 0.58
GPC1-206ENST00000455111 HAS3O00219 553 aa18.68■□□□□ 0.58
GPC1-206ENST00000455111 DHX16O60231 1041 aaKnown RBP18.68■□□□□ 0.58
GPC1-206ENST00000455111 GH1P01241 217 aa18.68■□□□□ 0.58
GPC1-206ENST00000455111 SUPT20HL2P0C7V6 817 aa18.68■□□□□ 0.58
GPC1-206ENST00000455111 ARHGEF16Q5VV41 709 aa18.68■□□□□ 0.58
GPC1-206ENST00000455111 SESTD1Q86VW0 696 aa18.68■□□□□ 0.58
GPC1-206ENST00000455111 MCF2L2Q86YR7 1114 aa18.68■□□□□ 0.58
GPC1-206ENST00000455111 MB21D2Q8IYB1 491 aaPredicted RBP18.68■□□□□ 0.58
GPC1-206ENST00000455111 IGDCC4Q8TDY8 1250 aa18.68■□□□□ 0.58
GPC1-206ENST00000455111 TELO2Q9Y4R8 837 aa18.68■□□□□ 0.58
GPC1-206ENST00000455111 PITPNM1O00562 1244 aa18.67■□□□□ 0.58
GPC1-206ENST00000455111 SORBS3O60504 671 aa18.67■□□□□ 0.58
GPC1-206ENST00000455111 KPNA6O60684 536 aa18.67■□□□□ 0.58
GPC1-206ENST00000455111 EIF3JO75822 258 aaKnown RBP18.67■□□□□ 0.58
GPC1-206ENST00000455111 HOXD8P13378 290 aaPredicted RBP18.67■□□□□ 0.58
GPC1-206ENST00000455111 PGM5Q15124 567 aa18.67■□□□□ 0.58
GPC1-206ENST00000455111 RAB30Q15771 203 aa18.67■□□□□ 0.58
GPC1-206ENST00000455111 TRIM71Q2Q1W2 868 aaKnown RBP18.67■□□□□ 0.58
GPC1-206ENST00000455111 SKAP1Q86WV1 359 aa18.67■□□□□ 0.58
GPC1-206ENST00000455111 HOMER1Q86YM7 354 aa18.67■□□□□ 0.58
GPC1-206ENST00000455111 RPUSD2Q8IZ73 545 aaKnown RBP18.67■□□□□ 0.58
GPC1-206ENST00000455111 MAP4K1Q92918 833 aa18.67■□□□□ 0.58
GPC1-206ENST00000455111 EMID1Q96A84 441 aaPredicted RBP18.67■□□□□ 0.58
GPC1-206ENST00000455111 MPHOSPH6Q99547 160 aaKnown RBP18.67■□□□□ 0.58
GPC1-206ENST00000455111 HDAC6Q9UBN7 1215 aa18.67■□□□□ 0.58
GPC1-206ENST00000455111 PCDHA1Q9Y5I3 950 aa18.67■□□□□ 0.58
GPC1-206ENST00000455111 SLC4A7Q9Y6M7 1214 aa18.67■□□□□ 0.58
GPC1-206ENST00000455111 ZBBXA8MT70 800 aa18.66■□□□□ 0.58
GPC1-206ENST00000455111 RFXAPO00287 272 aa18.66■□□□□ 0.58
GPC1-206ENST00000455111 ZNF286BP0CG31 522 aa18.66■□□□□ 0.58
GPC1-206ENST00000455111 CHMP4BP1P59074 171 aa18.66■□□□□ 0.58
GPC1-206ENST00000455111 ZNF200P98182 395 aaPredicted RBP18.66■□□□□ 0.58
GPC1-206ENST00000455111 PTGISQ16647 500 aa18.66■□□□□ 0.58
GPC1-206ENST00000455111 HSDL1Q3SXM5 330 aa18.66■□□□□ 0.58
GPC1-206ENST00000455111 TMCO2Q7Z6W1 182 aaPredicted RBP18.66■□□□□ 0.58
GPC1-206ENST00000455111 VSIG10LQ86VR7 867 aa18.66■□□□□ 0.58
GPC1-206ENST00000455111 PPM1EQ8WY54 764 aa18.66■□□□□ 0.58
GPC1-206ENST00000455111 MSRAQ9UJ68 235 aa18.66■□□□□ 0.58
GPC1-206ENST00000455111 PCDHA11Q9Y5I1 949 aa18.66■□□□□ 0.58
GPC1-206ENST00000455111 MYO9BQ13459 2157 aa18.66■□□□□ 0.58
GPC1-206ENST00000455111 B4DLN1 442 aa18.65■□□□□ 0.58
GPC1-206ENST00000455111 IFIT3O14879 490 aaKnown RBP18.65■□□□□ 0.58
GPC1-206ENST00000455111 F2P00734 622 aa18.65■□□□□ 0.58
GPC1-206ENST00000455111 ATP2A2P16615 1042 aaKnown RBP18.65■□□□□ 0.58
GPC1-206ENST00000455111 PSEN2P49810 448 aa18.65■□□□□ 0.58
GPC1-206ENST00000455111 MRPL12P52815 198 aaKnown RBP18.65■□□□□ 0.58
GPC1-206ENST00000455111 RBL2Q08999 1139 aa18.65■□□□□ 0.58
GPC1-206ENST00000455111 SEMA3FQ13275 785 aa18.65■□□□□ 0.58
GPC1-206ENST00000455111 MYSM1Q5VVJ2 828 aa18.65■□□□□ 0.58
GPC1-206ENST00000455111 MYL10Q9BUA6 226 aa18.65■□□□□ 0.58
GPC1-206ENST00000455111 GTF2IRD1Q9UHL9 959 aa18.65■□□□□ 0.58
GPC1-206ENST00000455111 SIP14410 1827 aa18.65■□□□□ 0.58
GPC1-206ENST00000455111 NBNO60934 754 aa18.64■□□□□ 0.57
GPC1-206ENST00000455111 CA3P07451 260 aa18.64■□□□□ 0.57
GPC1-206ENST00000455111 PFKMP08237 780 aa18.64■□□□□ 0.57
GPC1-206ENST00000455111 MYCLP12524 364 aaPredicted RBP18.64■□□□□ 0.57
GPC1-206ENST00000455111 UBA1P22314 1058 aaKnown RBP18.64■□□□□ 0.57
GPC1-206ENST00000455111 MRPS9P82933 396 aaKnown RBP18.64■□□□□ 0.57
GPC1-206ENST00000455111 MBTPS1Q14703 1052 aa18.64■□□□□ 0.57
GPC1-206ENST00000455111 CCDC85BQ15834 202 aaPredicted RBP18.64■□□□□ 0.57
GPC1-206ENST00000455111 BRDTQ58F21 947 aaPredicted RBP18.64■□□□□ 0.57
GPC1-206ENST00000455111 OSBPL7Q9BZF2 842 aa18.64■□□□□ 0.57
GPC1-206ENST00000455111 SLC28A3Q9HAS3 691 aa18.64■□□□□ 0.57
GPC1-206ENST00000455111 LY9Q9HBG7 655 aa18.64■□□□□ 0.57
GPC1-206ENST00000455111 RBM8AQ9Y5S9 174 aaKnown RBP18.64■□□□□ 0.57
GPC1-206ENST00000455111 MRVI1Q9Y6F6 885 aa18.64■□□□□ 0.57
GPC1-206ENST00000455111 U3KPZ7 1027 aaPredicted RBP18.64■□□□□ 0.57
GPC1-206ENST00000455111 FRMPD4Q14CM0 1322 aa18.64■□□□□ 0.57
GPC1-206ENST00000455111 RFC2P35250 354 aa18.63■□□□□ 0.57
GPC1-206ENST00000455111 WTAPQ15007 396 aa18.63■□□□□ 0.57
GPC1-206ENST00000455111 CELF3Q5SZQ8 465 aaKnown RBP18.63■□□□□ 0.57
GPC1-206ENST00000455111 NCOA7Q8NI08 942 aa18.63■□□□□ 0.57
GPC1-206ENST00000455111 PPTC7Q8NI37 304 aa18.63■□□□□ 0.57
GPC1-206ENST00000455111 GAS2L1Q99501 681 aaPredicted RBP18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms