RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 INTS4Q96HW7 963 aaKnown RBP10.08□□□□□ -0.8
SYNE1-214ENST00000454018 TRERF1Q96PN7 1200 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 EFCC1Q9HA90 598 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 SH3GLB2Q9NR46 395 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 BARHL2Q9NY43 387 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 ORC3Q9UBD5 711 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-214ENST00000454018 RIPK3Q9Y572 518 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 FRMPD3Q5JV73 1810 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 ESYT2A0FGR8 921 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 CFAP99D6REC4 459 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 STXBP3O00186 592 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 FOXN1O15353 648 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 STRNO43815 780 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 JAK2O60674 1132 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 PPFIA3O75145 1194 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 GABBR2O75899 941 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 HSPA8P11142 646 aaKnown RBP10.07□□□□□ -0.8
SYNE1-214ENST00000454018 FCER1AP12319 257 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 XBP1P17861 261 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 ANP32AP39687 249 aaKnown RBP10.07□□□□□ -0.8
SYNE1-214ENST00000454018 SLC4A3P48751 1232 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 NAPAP54920 295 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 GHRHRQ02643 423 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 KCTD2Q14681 263 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 PLEKHH3Q7Z736 793 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 MCF2L2Q86YR7 1114 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 ABRAQ8N0Z2 381 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 SAMD3Q8N6K7 520 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 COA7Q96BR5 231 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 NFIBO00712 420 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 HSP90AA1P07900 732 aaKnown RBP10.07□□□□□ -0.8
SYNE1-214ENST00000454018 FDPSP14324 419 aaKnown RBP10.07□□□□□ -0.8
SYNE1-214ENST00000454018 TAL1P17542 331 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-214ENST00000454018 PSMC4P43686 418 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 GRB14Q14449 540 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 MUM1L1Q5H9M0 696 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 FAM184AQ8NB25 1140 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 CD99L2Q8TCZ2 262 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 CLEC4DQ8WXI8 215 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 DDX11Q96FC9 970 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 TRIM47Q96LD4 638 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 MMP19Q99542 508 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 GLT8D2Q9H1C3 349 aa10.07□□□□□ -0.8
SYNE1-214ENST00000454018 A1CFQ9NQ94 594 aaKnown RBP10.07□□□□□ -0.8
SYNE1-214ENST00000454018 MAP3K20Q9NYL2 800 aaKnown RBP10.07□□□□□ -0.8
SYNE1-214ENST00000454018 SLC15A5A6NIM6 579 aa10.06□□□□□ -0.8
SYNE1-214ENST00000454018 PPP1R3GB7ZBB8 358 aa10.06□□□□□ -0.8
SYNE1-214ENST00000454018 OPLAHO14841 1288 aa10.06□□□□□ -0.8
SYNE1-214ENST00000454018 PTPREP23469 700 aa10.06□□□□□ -0.8
SYNE1-214ENST00000454018 NSMFQ6X4W1 530 aa10.06□□□□□ -0.8
SYNE1-214ENST00000454018 RNF207Q6ZRF8 634 aa10.06□□□□□ -0.8
SYNE1-214ENST00000454018 ANKRD35Q8N283 1001 aa10.06□□□□□ -0.8
SYNE1-214ENST00000454018 CUL5Q93034 780 aa10.06□□□□□ -0.8
SYNE1-214ENST00000454018 ALG1Q9BT22 464 aa10.06□□□□□ -0.8
SYNE1-214ENST00000454018 ARHGAP39Q9C0H5 1083 aa10.06□□□□□ -0.8
SYNE1-214ENST00000454018 ZMYND12Q9H0C1 365 aa10.06□□□□□ -0.8
SYNE1-214ENST00000454018 CYP39A1Q9NYL5 469 aa10.06□□□□□ -0.8
SYNE1-214ENST00000454018 SMC3Q9UQE7 1217 aa10.06□□□□□ -0.8
SYNE1-214ENST00000454018 DOCK5Q9H7D0 1870 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 WDR81Q562E7 1941 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 PIK3CDO00329 1044 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 CALML3P27482 149 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 HOXD10P28358 340 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 ADORA2AP29274 412 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 CTGFP29279 349 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 GNA11P29992 359 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 SOX11P35716 441 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 HSD17B4P51659 736 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 ADCY7P51828 1080 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 TRIM29Q14134 588 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 GALNT17Q6IS24 598 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 SLC30A10Q6XR72 485 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 BICD2Q8TD16 824 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 APBA2Q99767 749 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 NUDT12Q9BQG2 462 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 PSTPIP2Q9H939 334 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 C6orf50Q9HD87 102 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 RIC8AQ9NPQ8 531 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 SLC5A4Q9NY91 659 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 VPS54Q9P1Q0 977 aa10.05□□□□□ -0.8
SYNE1-214ENST00000454018 GNEQ9Y223 722 aaKnown RBP10.05□□□□□ -0.8
SYNE1-214ENST00000454018 DNAJC25-GNG10A0A024R161 153 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 GCOM1H8Y6P7 765 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-214ENST00000454018 CFBP00751 764 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 HOXC6P09630 235 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 POLR2MP0CAP2 368 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 GJB2P29033 226 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 RGS2P41220 211 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 MRPL12P52815 198 aaKnown RBP10.04□□□□□ -0.8
SYNE1-214ENST00000454018 LBX1P52954 281 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 PRMT2P55345 433 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 RPS6P62753 249 aaKnown RBP10.04□□□□□ -0.8
SYNE1-214ENST00000454018 SEMA3FQ13275 785 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 MORN1Q5T089 497 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 PACS2Q86VP3 889 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 DAGLBQ8NCG7 672 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 AIFM3Q96NN9 605 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 SRRDQ9UH36 339 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 TCHHQ07283 1943 aa10.04□□□□□ -0.8
SYNE1-214ENST00000454018 LOC102724159A0A0B4J2E5 919 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms