RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ARHGAP6O43182 974 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 FDX1P10109 184 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 ERCC5P28715 1186 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-213ENST00000448038 ADKP55263 362 aaKnown RBP8.17□□□□□ -1.1
SYNE1-213ENST00000448038 MTMR1Q13613 665 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 TFDP1Q14186 410 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 MTERF2Q49AM1 385 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 ZNF658Q5TYW1 1059 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-213ENST00000448038 NUCKS1Q9H1E3 243 aaKnown RBP8.17□□□□□ -1.1
SYNE1-213ENST00000448038 SHPRHQ149N8 1683 aa8.17□□□□□ -1.1
SYNE1-213ENST00000448038 DLATP10515 647 aaKnown RBP8.16□□□□□ -1.1
SYNE1-213ENST00000448038 STXBP2Q15833 593 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 IQCDQ96DY2 449 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 PAGE5Q96GU1 130 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 DHTKD1Q96HY7 919 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-213ENST00000448038 PPP1R9BQ96SB3 815 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 DEFB129Q9H1M3 183 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 ELP3Q9H9T3 547 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 CLCN1P35523 988 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 MAGEA1P43355 309 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 PLCB3Q01970 1234 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 RESP18Q5W5W9 173 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 RETREG2Q8NC44 543 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 RNF169Q8NCN4 708 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 NSUN6Q8TEA1 469 aaKnown RBP8.16□□□□□ -1.1
SYNE1-213ENST00000448038 JAKMIP2Q96AA8 810 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 NOX5Q96PH1 765 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 KMT5AQ9NQR1 393 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 AKT3Q9Y243 479 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 POTEMA6NI47 508 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 LMAN1P49257 510 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 GBP6Q6ZN66 633 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 LDHDQ86WU2 507 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 ZNF354CQ86Y25 554 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 SLC17A8Q8NDX2 589 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 PRMT6Q96LA8 375 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-213ENST00000448038 ANAPC4Q9UJX5 808 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 NR2F2P24468 414 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 STAT3P40763 770 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 LIN9Q5TKA1 542 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 TYW1BQ6NUM6 668 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 GAS2L3Q86XJ1 694 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 P2RX5Q93086 422 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 CNOT6LQ96LI5 555 aaKnown RBP8.16□□□□□ -1.1
SYNE1-213ENST00000448038 SENP2Q9HC62 589 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 SPOPO43791 374 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 SLU7O95391 586 aaKnown RBP8.16□□□□□ -1.1
SYNE1-213ENST00000448038 C11orf57Q6ZUT1 292 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-213ENST00000448038 OR8K1Q8NGG5 319 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 RIOK1Q9BRS2 568 aaKnown RBP8.16□□□□□ -1.1
SYNE1-213ENST00000448038 BHMT2Q9H2M3 363 aa8.16□□□□□ -1.1
SYNE1-213ENST00000448038 BCCIPQ9P287 314 aaKnown RBP eCLIP8.16□□□□□ -1.1
SYNE1-213ENST00000448038 ADAMTSL3P82987 1691 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 XRN1Q8IZH2 1706 aaKnown RBP8.15□□□□□ -1.1
SYNE1-213ENST00000448038 RGPD8O14715 1765 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-213ENST00000448038 INO80B-WBP1J3KQ70 363 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 N4BP1O75113 896 aaKnown RBP8.15□□□□□ -1.1
SYNE1-213ENST00000448038 IL1R1P14778 569 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 FASTKD5Q7L8L6 764 aaKnown RBP8.15□□□□□ -1.1
SYNE1-213ENST00000448038 LPAR1Q92633 364 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 INO80BQ9C086 356 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-213ENST00000448038 PARVGQ9HBI0 331 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 RASAL2Q9UJF2 1139 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 SALL3Q9BXA9 1300 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 P4HA1P13674 534 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 STAT1P42224 750 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 ZNF579Q8NAF0 562 aaKnown RBP8.15□□□□□ -1.1
SYNE1-213ENST00000448038 ZNF280CQ8ND82 737 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 FAM20AQ96MK3 541 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 ZDHHC15Q96MV8 337 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 ACAD9Q9H845 621 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 RIC8AQ9NPQ8 531 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-213ENST00000448038 NALCNQ8IZF0 1738 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 KIF28PB7ZC32 967 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 WDR46O15213 610 aaKnown RBP8.15□□□□□ -1.1
SYNE1-213ENST00000448038 TNNC2P02585 160 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 PDHBP11177 359 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 COPB1P53618 953 aaKnown RBP8.15□□□□□ -1.1
SYNE1-213ENST00000448038 GSTA5Q7RTV2 222 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 POTEDQ86YR6 584 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 TUBGCP2Q9BSJ2 902 aa8.15□□□□□ -1.1
SYNE1-213ENST00000448038 AKAP12Q02952 1782 aa8.15□□□□□ -1.11
SYNE1-213ENST00000448038 EXOC8Q8IYI6 725 aa8.15□□□□□ -1.11
SYNE1-213ENST00000448038 RBM46Q8TBY0 533 aaKnown RBP8.15□□□□□ -1.11
SYNE1-213ENST00000448038 CCDC51Q96ER9 411 aa8.15□□□□□ -1.11
SYNE1-213ENST00000448038 ACCSQ96QU6 501 aa8.15□□□□□ -1.11
SYNE1-213ENST00000448038 ZNF215Q9UL58 517 aaPredicted RBP8.15□□□□□ -1.11
SYNE1-213ENST00000448038 MARK3P27448 753 aa8.15□□□□□ -1.11
SYNE1-213ENST00000448038 YARSP54577 528 aaKnown RBP8.15□□□□□ -1.11
SYNE1-213ENST00000448038 NFIAQ12857 509 aa8.15□□□□□ -1.11
SYNE1-213ENST00000448038 COG2Q14746 738 aa8.15□□□□□ -1.11
SYNE1-213ENST00000448038 KMT5BQ4FZB7 885 aa8.15□□□□□ -1.11
SYNE1-213ENST00000448038 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.15□□□□□ -1.11
SYNE1-213ENST00000448038 PIGOQ8TEQ8 1089 aa8.15□□□□□ -1.11
SYNE1-213ENST00000448038 RTFDC1Q9BY42 306 aaPredicted RBP8.15□□□□□ -1.11
SYNE1-213ENST00000448038 VCPKMTQ9H867 229 aa8.15□□□□□ -1.11
SYNE1-213ENST00000448038 EMILIN3Q9NT22 766 aa8.15□□□□□ -1.11
SYNE1-213ENST00000448038 CTTNBP2NLQ9P2B4 639 aa8.15□□□□□ -1.11
SYNE1-213ENST00000448038 TDP2O95551 362 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms