RNA–Protein interactions for RNA: ENST00000446312.5

DDR1-238, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 5 BASIC

Gene DDR1, Length 3,202 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-238	ENST00000446312	KIF5B	P33176	963 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	PAFAH1B1	P43034	410 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	GSC	P56915	257 aa	Predicted RBP	13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	PRPF4B	Q13523	1007 aa	Known RBP	13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	FAM133A	Q8N9E0	248 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	TBC1D5	Q92609	795 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	ZIM3	Q96PE6	472 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	TAF1	P21675	1872 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	FAM196B	A6NMK8	535 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	MEIS1	O00470	390 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	HEXIM1	O94992	359 aa	Known RBP	13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	NKX1-1	Q15270	411 aa	Predicted RBP	13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	ODF2	Q5BJF6	829 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	TTMP	Q5BVD1	217 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	TMEM47	Q9BQJ4	181 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	NDST4	Q9H3R1	872 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	DCC	P43146	1447 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	PALM	O75781	387 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	SRGN	P10124	158 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	CKAP4	Q07065	602 aa	Known RBP	13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	NNT	Q13423	1086 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	CCDC47	Q96A33	483 aa	Known RBP	13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	LSM14B	Q9BX40	385 aa	Known RBP	13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	KCP	Q6ZWJ8	1503 aa		13.86	□□□□□ -0.19
DDR1-238	ENST00000446312	SLC37A4	O43826	429 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	HSF2BP	O75031	334 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	ERLIN2	O94905	339 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	CAMTA2	O94983	1202 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	NTSR2	O95665	410 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	KRT18	P05783	430 aa	Known RBP	13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	LONP1	P36776	959 aa	Known RBP	13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	ZBED6	P86452	979 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	MIIP	Q5JXC2	388 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	SNX29	Q8TEQ0	813 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	DNAJC7	Q99615	494 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	JPH2	Q9BR39	696 aa	Predicted RBP	13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	SEPT11	Q9NVA2	429 aa	Known RBP	13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	SNX12	Q9UMY4	172 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	LAMB4	A4D0S4	1761 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	LRRC10B	A6NIK2	292 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	USP17L5	A8MUK1	530 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	BMP15	O95972	392 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	OR52Z1	P0C646	297 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	CCNE1	P24864	410 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	USP8	P40818	1118 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	EPS15	P42566	896 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	VAV2	P52735	878 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	TBC1D9B	Q66K14	1250 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	CEP89	Q96ST8	783 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	DPH5	Q9H2P9	285 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	ITIH6	Q6UXX5	1313 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	COL1A1	P02452	1464 aa	Predicted RBP	13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	SHTN1	A0MZ66	631 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	TMOD1	P28289	359 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	TJP1	Q07157	1748 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	CEP85L	Q5SZL2	805 aa		13.85	□□□□□ -0.19
DDR1-238	ENST00000446312	CALM1	P0DP23	149 aa		13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	CALM2	P0DP24	149 aa		13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	CALM3	P0DP25	149 aa		13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	STAT3	P40763	770 aa		13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	DCAF17	Q5H9S7	520 aa	Predicted RBP	13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	CFAP58	Q5T655	872 aa		13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	GIMAP8	Q8ND71	665 aa	Predicted RBP	13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	PDS5A	Q29RF7	1337 aa	Known RBP	13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	FRMD3	A2A2Y4	597 aa		13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	SFI1	A8K8P3	1242 aa		13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	KCNK3	O14649	394 aa		13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	CALML3	P27482	149 aa		13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	RDX	P35241	583 aa	Known RBP	13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	ACTN3	Q08043	901 aa	Predicted RBP	13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	IFT88	Q13099	833 aa		13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	TRIM14	Q14142	442 aa		13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	SWT1	Q5T5J6	900 aa	Known RBP	13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	SUGP1	Q8IWZ8	645 aa	Known RBP	13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	CALML4	Q96GE6	196 aa		13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	RNPC3	Q96LT9	517 aa	Known RBP	13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	IRAK4	Q9NWZ3	460 aa		13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	MAD2L2	Q9UI95	211 aa		13.84	□□□□□ -0.19
DDR1-238	ENST00000446312	NUP188	Q5SRE5	1749 aa		13.83	□□□□□ -0.19
DDR1-238	ENST00000446312		E9PMD0	336 aa		13.83	□□□□□ -0.19
DDR1-238	ENST00000446312	CEP104	O60308	925 aa		13.83	□□□□□ -0.19
DDR1-238	ENST00000446312	DDAH1	O94760	285 aa		13.83	□□□□□ -0.19
DDR1-238	ENST00000446312	KLRC1	P26715	233 aa		13.83	□□□□□ -0.19
DDR1-238	ENST00000446312	CORO7	P57737	925 aa		13.83	□□□□□ -0.19
DDR1-238	ENST00000446312	RPS8	P62241	208 aa	Known RBP	13.83	□□□□□ -0.19
DDR1-238	ENST00000446312	PLS1	Q14651	629 aa		13.83	□□□□□ -0.19
DDR1-238	ENST00000446312	NFIX	Q14938	502 aa		13.83	□□□□□ -0.19
DDR1-238	ENST00000446312	KIAA0753	Q2KHM9	967 aa		13.83	□□□□□ -0.19
DDR1-238	ENST00000446312	GJB7	Q6PEY0	223 aa		13.83	□□□□□ -0.19
DDR1-238	ENST00000446312	TADA2B	Q86TJ2	420 aa		13.83	□□□□□ -0.19
DDR1-238	ENST00000446312	KIRREL3	Q8IZU9	778 aa		13.83	□□□□□ -0.19
DDR1-238	ENST00000446312	PSD3	Q9NYI0	1048 aa		13.83	□□□□□ -0.19
DDR1-238	ENST00000446312	TLDC2	A0PJX2	215 aa		13.83	□□□□□ -0.2
DDR1-238	ENST00000446312		E7EVH7	732 aa		13.83	□□□□□ -0.2
DDR1-238	ENST00000446312	EEF1G	P26641	437 aa	Known RBP	13.83	□□□□□ -0.2
DDR1-238	ENST00000446312	INPP5B	P32019	993 aa		13.83	□□□□□ -0.2
DDR1-238	ENST00000446312	PAPD7	Q5XG87	772 aa	Known RBP	13.83	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms