RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 CTU1Q7Z7A3 348 aaKnown RBP17.97■□□□□ 0.47
USP40-206ENST00000443711 FLRT1Q9NZU1 646 aa17.97■□□□□ 0.47
USP40-206ENST00000443711 CHMP5Q9NZZ3 219 aa17.97■□□□□ 0.47
USP40-206ENST00000443711 ZDHHC9Q9Y397 364 aa17.97■□□□□ 0.47
USP40-206ENST00000443711 TRAPPC10P48553 1259 aa17.96■□□□□ 0.47
USP40-206ENST00000443711 LETM2Q2VYF4 491 aa17.96■□□□□ 0.47
USP40-206ENST00000443711 RILPL1Q5EBL4 403 aa17.96■□□□□ 0.47
USP40-206ENST00000443711 MFSD14CQ5VZR4 134 aa17.96■□□□□ 0.47
USP40-206ENST00000443711 PXYLP1Q8TE99 480 aa17.96■□□□□ 0.47
USP40-206ENST00000443711 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.96■□□□□ 0.47
USP40-206ENST00000443711 PTPN22Q9Y2R2 807 aa17.96■□□□□ 0.47
USP40-206ENST00000443711 GCFC2P16383 781 aaKnown RBP17.95■□□□□ 0.46
USP40-206ENST00000443711 ATP2B1P20020 1258 aa17.95■□□□□ 0.46
USP40-206ENST00000443711 CIITAP33076 1130 aa17.95■□□□□ 0.46
USP40-206ENST00000443711 MRPS9P82933 396 aaKnown RBP17.95■□□□□ 0.46
USP40-206ENST00000443711 MYSM1Q5VVJ2 828 aa17.95■□□□□ 0.46
USP40-206ENST00000443711 MOXD1Q6UVY6 613 aa17.95■□□□□ 0.46
USP40-206ENST00000443711 NLRX1Q86UT6 975 aa17.95■□□□□ 0.46
USP40-206ENST00000443711 TRIB2Q92519 343 aa17.95■□□□□ 0.46
USP40-206ENST00000443711 PRDM10Q9NQV6 1147 aa17.95■□□□□ 0.46
USP40-206ENST00000443711 CNPY2Q9Y2B0 182 aa17.95■□□□□ 0.46
USP40-206ENST00000443711 UBIAD1Q9Y5Z9 338 aa17.95■□□□□ 0.46
USP40-206ENST00000443711 KIAA1217Q5T5P2 1943 aa17.95■□□□□ 0.46
USP40-206ENST00000443711 PCNTO95613 3336 aa17.95■□□□□ 0.46
USP40-206ENST00000443711 CYP3A7-CYP3A51PA0A087WV96 503 aa17.94■□□□□ 0.46
USP40-206ENST00000443711 SNAI1O95863 264 aaPredicted RBP17.94■□□□□ 0.46
USP40-206ENST00000443711 IGHA2P01877 340 aa17.94■□□□□ 0.46
USP40-206ENST00000443711 CYP3A7P24462 503 aa17.94■□□□□ 0.46
USP40-206ENST00000443711 CEP55Q53EZ4 464 aa17.94■□□□□ 0.46
USP40-206ENST00000443711 PPP4R3AQ6IN85 833 aa17.94■□□□□ 0.46
USP40-206ENST00000443711 SLAIN1Q8ND83 568 aa17.94■□□□□ 0.46
USP40-206ENST00000443711 ZFP91Q96JP5 570 aaPredicted RBP17.94■□□□□ 0.46
USP40-206ENST00000443711 MXRA8Q9BRK3 442 aa17.94■□□□□ 0.46
USP40-206ENST00000443711 ABHD16BQ9H3Z7 469 aa17.94■□□□□ 0.46
USP40-206ENST00000443711 VTA1Q9NP79 307 aa17.94■□□□□ 0.46
USP40-206ENST00000443711 RTEL1Q9NZ71 1219 aa17.94■□□□□ 0.46
USP40-206ENST00000443711 ATP6V1DQ9Y5K8 247 aa17.94■□□□□ 0.46
USP40-206ENST00000443711 PTCH2Q9Y6C5 1203 aa17.94■□□□□ 0.46
USP40-206ENST00000443711 DDX49Q9Y6V7 483 aaKnown RBP17.94■□□□□ 0.46
USP40-206ENST00000443711 LRRC37A2A6NM11 1700 aa17.93■□□□□ 0.46
USP40-206ENST00000443711 MEIS1O00470 390 aa17.93■□□□□ 0.46
USP40-206ENST00000443711 EDIL3O43854 480 aa17.93■□□□□ 0.46
USP40-206ENST00000443711 CCNT1O60563 726 aaKnown RBP17.93■□□□□ 0.46
USP40-206ENST00000443711 ELNP15502 786 aa17.93■□□□□ 0.46
USP40-206ENST00000443711 GRK4P32298 578 aa17.93■□□□□ 0.46
USP40-206ENST00000443711 CYP2C19P33261 490 aa17.93■□□□□ 0.46
USP40-206ENST00000443711 TOB1P50616 345 aaPredicted RBP17.93■□□□□ 0.46
USP40-206ENST00000443711 PKN2Q16513 984 aaKnown RBP17.93■□□□□ 0.46
USP40-206ENST00000443711 GNPTABQ3T906 1256 aa17.93■□□□□ 0.46
USP40-206ENST00000443711 TTC38Q5R3I4 469 aa17.93■□□□□ 0.46
USP40-206ENST00000443711 EEPD1Q7L9B9 569 aa17.93■□□□□ 0.46
USP40-206ENST00000443711 NIPA1Q7RTP0 329 aa17.93■□□□□ 0.46
USP40-206ENST00000443711 INPP4AQ96PE3 977 aaPredicted RBP17.93■□□□□ 0.46
USP40-206ENST00000443711 JADE2Q9NQC1 790 aa17.93■□□□□ 0.46
USP40-206ENST00000443711 NRBP1Q9UHY1 535 aa17.93■□□□□ 0.46
USP40-206ENST00000443711 MYH15Q9Y2K3 1946 aa17.93■□□□□ 0.46
USP40-206ENST00000443711 FAM86B1E9PN63 330 aa17.92■□□□□ 0.46
USP40-206ENST00000443711 TDP2O95551 362 aa17.92■□□□□ 0.46
USP40-206ENST00000443711 HMGCRP04035 888 aa17.92■□□□□ 0.46
USP40-206ENST00000443711 FAM86B2P0C5J1 330 aa17.92■□□□□ 0.46
USP40-206ENST00000443711 ITGB5P18084 799 aa17.92■□□□□ 0.46
USP40-206ENST00000443711 ORC2Q13416 577 aaPredicted RBP17.92■□□□□ 0.46
USP40-206ENST00000443711 ACVR2BQ13705 512 aa17.92■□□□□ 0.46
USP40-206ENST00000443711 PRR16Q569H4 304 aa17.92■□□□□ 0.46
USP40-206ENST00000443711 FAM173BQ6P4H8 233 aa17.92■□□□□ 0.46
USP40-206ENST00000443711 PLA2G4DQ86XP0 818 aa17.92■□□□□ 0.46
USP40-206ENST00000443711 GPRASP2Q96D09 838 aa17.92■□□□□ 0.46
USP40-206ENST00000443711 CDHR1Q96JP9 859 aa17.92■□□□□ 0.46
USP40-206ENST00000443711 MBOAT7Q96N66 472 aa17.92■□□□□ 0.46
USP40-206ENST00000443711 ZNF396Q96N95 335 aaPredicted RBP17.92■□□□□ 0.46
USP40-206ENST00000443711 DDX25Q9UHL0 483 aaKnown RBP17.92■□□□□ 0.46
USP40-206ENST00000443711 IGLV3-22A0A075B6J6 115 aa17.91■□□□□ 0.46
USP40-206ENST00000443711 MAFGO15525 162 aa17.91■□□□□ 0.46
USP40-206ENST00000443711 RGS20O76081 388 aa17.91■□□□□ 0.46
USP40-206ENST00000443711 SETQ01105 290 aaPredicted RBP17.91■□□□□ 0.46
USP40-206ENST00000443711 ZNF174Q15697 407 aa17.91■□□□□ 0.46
USP40-206ENST00000443711 Q4G0T1 1027 aa17.91■□□□□ 0.46
USP40-206ENST00000443711 KCNV1Q6PIU1 500 aa17.91■□□□□ 0.46
USP40-206ENST00000443711 FBXO46Q6PJ61 603 aaPredicted RBP17.91■□□□□ 0.46
USP40-206ENST00000443711 SEPT14Q6ZU15 432 aa17.91■□□□□ 0.46
USP40-206ENST00000443711 FBXO16Q8IX29 292 aaPredicted RBP17.91■□□□□ 0.46
USP40-206ENST00000443711 CYP2W1Q8TAV3 490 aa17.91■□□□□ 0.46
USP40-206ENST00000443711 WDR11Q9BZH6 1224 aa17.91■□□□□ 0.46
USP40-206ENST00000443711 KATNBL1Q9H079 304 aa17.91■□□□□ 0.46
USP40-206ENST00000443711 PCDHB6Q9Y5E3 794 aa17.91■□□□□ 0.46
USP40-206ENST00000443711 RBM47A0AV96 593 aaKnown RBP17.9■□□□□ 0.46
USP40-206ENST00000443711 FIBPO43427 364 aa17.9■□□□□ 0.46
USP40-206ENST00000443711 ICAM3P32942 547 aa17.9■□□□□ 0.46
USP40-206ENST00000443711 MCM7P33993 719 aa17.9■□□□□ 0.46
USP40-206ENST00000443711 MTMR1Q13613 665 aa17.9■□□□□ 0.46
USP40-206ENST00000443711 PRAMEF19Q5SWL8 479 aa17.9■□□□□ 0.46
USP40-206ENST00000443711 ATL3Q6DD88 541 aa17.9■□□□□ 0.46
USP40-206ENST00000443711 IQSEC1Q6DN90 963 aa17.9■□□□□ 0.46
USP40-206ENST00000443711 TAPT1Q6NXT6 567 aa17.9■□□□□ 0.46
USP40-206ENST00000443711 SCFD2Q8WU76 684 aa17.9■□□□□ 0.46
USP40-206ENST00000443711 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.9■□□□□ 0.46
USP40-206ENST00000443711 ZHX1Q9UKY1 873 aaPredicted RBP17.9■□□□□ 0.46
USP40-206ENST00000443711 SPATA31C2B4DYI2 1134 aa17.89■□□□□ 0.45
USP40-206ENST00000443711 WNT7AO00755 349 aa17.89■□□□□ 0.45
USP40-206ENST00000443711 NEMFO60524 1076 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms