RNA–Protein interactions for RNA: ENST00000440127.1

HMGB3P11-201, Transcript of high mobility group box 3 pseudogene 11, humanhuman

BASIC

Gene HMGB3P11, Length 604 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P11-201ENST00000440127 HOXA5P20719 270 aa4.76□□□□□ -1.65
HMGB3P11-201ENST00000440127 CEBPAP49715 358 aaPredicted RBP4.76□□□□□ -1.65
HMGB3P11-201ENST00000440127 PRR5P85299 388 aa4.76□□□□□ -1.65
HMGB3P11-201ENST00000440127 KCNAB2Q13303 367 aa4.76□□□□□ -1.65
HMGB3P11-201ENST00000440127 E4F1Q66K89 784 aaPredicted RBP4.76□□□□□ -1.65
HMGB3P11-201ENST00000440127 FAM177A1Q8N128 213 aaPredicted RBP4.76□□□□□ -1.65
HMGB3P11-201ENST00000440127 RELTQ969Z4 430 aa4.76□□□□□ -1.65
HMGB3P11-201ENST00000440127 PUS7Q96PZ0 661 aaKnown RBP4.76□□□□□ -1.65
HMGB3P11-201ENST00000440127 SIN3AQ96ST3 1273 aa4.76□□□□□ -1.65
HMGB3P11-201ENST00000440127 MMP19Q99542 508 aa4.76□□□□□ -1.65
HMGB3P11-201ENST00000440127 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.76□□□□□ -1.65
HMGB3P11-201ENST00000440127 NGRNQ9NPE2 291 aaKnown RBP4.76□□□□□ -1.65
HMGB3P11-201ENST00000440127 CYP26B1Q9NR63 512 aa4.76□□□□□ -1.65
HMGB3P11-201ENST00000440127 MAPKBP1O60336 1514 aa4.76□□□□□ -1.65
HMGB3P11-201ENST00000440127 SYNJ2O15056 1496 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 MAGI1Q96QZ7 1491 aaPredicted RBP4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 SUPT6HQ7KZ85 1726 aaKnown RBP4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 HFM1A2PYH4 1435 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 PTPRKQ15262 1439 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 MIA2Q96PC5 1412 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 TRIM13O60858 407 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 VAMP4O75379 141 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 CPP00450 1065 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 IGFBP6P24592 240 aaPredicted RBP4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 SCRN1Q12765 414 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 SF3A1Q15459 793 aaKnown RBP4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 CHRNA2Q15822 529 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 LCE5AQ5TCM9 118 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 EEPD1Q7L9B9 569 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 B3GNT8Q7Z7M8 397 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 ZC3H18Q86VM9 953 aaKnown RBP4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 TRIM59Q8IWR1 403 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 TMEFF1Q8IYR6 380 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 CPA5Q8WXQ8 436 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 UBXN4Q92575 508 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 DDX11Q96FC9 970 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 BORCS6Q96GS4 357 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 TEPSINQ96N21 525 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 KRTAP17-1Q9BYP8 105 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 PRKAG3Q9UGI9 489 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 RWDD3Q9Y3V2 267 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 ARHGEF11O15085 1522 aa4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 TCOF1Q13428 1488 aaKnown RBP4.75□□□□□ -1.65
HMGB3P11-201ENST00000440127 NCANO14594 1321 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 EIF4G3O43432 1585 aaKnown RBP4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 UACAQ9BZF9 1416 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 MAGI3Q5TCQ9 1506 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 DISP1Q96F81 1524 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 SMAD7O15105 426 aaKnown RBP4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 HOXC12P31275 282 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 KCNC1P48547 511 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 RPL11P62913 178 aaKnown RBP4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 ARID5AQ03989 594 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 SV2CQ496J9 727 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 MROH9Q5TGP6 573 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 LARP1BQ659C4 914 aaKnown RBP4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 GTF2IRD2BQ6EKJ0 949 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 GTF2IRD2Q86UP8 949 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 FAM178BQ8IXR5 827 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 SEC14L1Q92503 715 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 TINF2Q9BSI4 451 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 NKX2-4Q9H2Z4 354 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 USP40Q9NVE5 1235 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 SUSD2Q9UGT4 822 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 COA3Q9Y2R0 106 aaPredicted RBP4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 KIAA0556O60303 1618 aa4.74□□□□□ -1.65
HMGB3P11-201ENST00000440127 NAIPQ13075 1403 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 PTPN23Q9H3S7 1636 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 LRRIQ1Q96JM4 1722 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 C7orf72A4D263 438 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 MEFVO15553 781 aaPredicted RBP4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 SMARCA5O60264 1052 aaPredicted RBP4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 DDAH1O94760 285 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 ASGR2P07307 311 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 CYP2C8P10632 490 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 PLS3P13797 630 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 HSP90B1P14625 803 aaKnown RBP4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 BUD31P41223 144 aaPredicted RBP4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 LIMS1P48059 325 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 SLC6A11P48066 632 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 NCKAP1LP55160 1127 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 FOXO4P98177 505 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 TTLL7Q6ZT98 887 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 FRMD5Q7Z6J6 570 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 CPNE8Q86YQ8 564 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 FAM169BQ8N8A8 192 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 CXorf38Q8TB03 319 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 PANK1Q8TE04 598 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 COPS5Q92905 334 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 YIPF4Q9BSR8 244 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 RRP7BPQ9NSQ0 103 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 NTMQ9P121 344 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 CLEC1BQ9P126 229 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 GULP1Q9UBP9 304 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 APEX2Q9UBZ4 518 aa4.73□□□□□ -1.65
HMGB3P11-201ENST00000440127 NUP160Q12769 1436 aa4.72□□□□□ -1.65
HMGB3P11-201ENST00000440127 CDK13Q14004 1512 aaKnown RBP4.72□□□□□ -1.65
HMGB3P11-201ENST00000440127 IQCA1LA6NCM1 817 aa4.72□□□□□ -1.65
HMGB3P11-201ENST00000440127 MAFKO60675 156 aa4.72□□□□□ -1.65
HMGB3P11-201ENST00000440127 FUCA1P04066 466 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms