RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 NUDT12Q9BQG2 462 aa28.77■■■□□ 2.2
CPNE1-216ENST00000437340 HACL1Q9UJ83 578 aa28.77■■■□□ 2.2
CPNE1-216ENST00000437340 FEM1BQ9UK73 627 aa28.77■■■□□ 2.2
CPNE1-216ENST00000437340 BICDL2A1A5D9 508 aa28.76■■■□□ 2.19
CPNE1-216ENST00000437340 CYP3A4P08684 503 aa28.76■■■□□ 2.19
CPNE1-216ENST00000437340 TNNT1P13805 278 aa28.76■■■□□ 2.19
CPNE1-216ENST00000437340 E4F1Q66K89 784 aaPredicted RBP28.76■■■□□ 2.19
CPNE1-216ENST00000437340 NYAP1Q6ZVC0 841 aa28.76■■■□□ 2.19
CPNE1-216ENST00000437340 THAP9Q9H5L6 903 aa28.76■■■□□ 2.19
CPNE1-216ENST00000437340 ITIH6Q6UXX5 1313 aa28.76■■■□□ 2.19
CPNE1-216ENST00000437340 MYMKA6NI61 221 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 USP27XA6NNY8 438 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 KCNJ18B7U540 433 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 TEX33O43247 280 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 CCP110O43303 1012 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 KCNJ12Q14500 433 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 FCHSD1Q86WN1 690 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 MYRIPQ8NFW9 859 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 STK24Q9Y6E0 443 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 PHF20L1A8MW92 1017 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 CCNE1P24864 410 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 COPB1P53618 953 aaKnown RBP28.75■■■□□ 2.19
CPNE1-216ENST00000437340 TTI2Q6NXR4 508 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 TC2NQ8N9U0 490 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 ETNPPLQ8TBG4 499 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 TEPSINQ96N21 525 aa28.75■■■□□ 2.19
CPNE1-216ENST00000437340 UQCRHLA0A096LP55 91 aa28.74■■■□□ 2.19
CPNE1-216ENST00000437340 KIF2AO00139 706 aaPredicted RBP28.74■■■□□ 2.19
CPNE1-216ENST00000437340 GRIN3BO60391 1043 aa28.74■■■□□ 2.19
CPNE1-216ENST00000437340 UQCRHP07919 91 aa28.74■■■□□ 2.19
CPNE1-216ENST00000437340 EEF1GP26641 437 aaKnown RBP28.74■■■□□ 2.19
CPNE1-216ENST00000437340 STK4Q13043 487 aa28.74■■■□□ 2.19
CPNE1-216ENST00000437340 PTPN14Q15678 1187 aa28.74■■■□□ 2.19
CPNE1-216ENST00000437340 PTPN21Q16825 1174 aa28.74■■■□□ 2.19
CPNE1-216ENST00000437340 FAM20AQ96MK3 541 aa28.74■■■□□ 2.19
CPNE1-216ENST00000437340 ARHGAP6O43182 974 aa28.73■■■□□ 2.19
CPNE1-216ENST00000437340 COBLO75128 1261 aa28.73■■■□□ 2.19
CPNE1-216ENST00000437340 CCT6AP40227 531 aaKnown RBP28.73■■■□□ 2.19
CPNE1-216ENST00000437340 TMEM139Q8IV31 216 aa28.73■■■□□ 2.19
CPNE1-216ENST00000437340 P2RX5Q93086 422 aa28.73■■■□□ 2.19
CPNE1-216ENST00000437340 MRPL11Q9Y3B7 192 aaKnown RBP28.73■■■□□ 2.19
CPNE1-216ENST00000437340 POLR2AP24928 1970 aaKnown RBP28.73■■■□□ 2.19
CPNE1-216ENST00000437340 N4BP3O15049 544 aa28.73■■■□□ 2.19
CPNE1-216ENST00000437340 STX10O60499 249 aa28.73■■■□□ 2.19
CPNE1-216ENST00000437340 PMS1P54277 932 aaKnown RBP28.73■■■□□ 2.19
CPNE1-216ENST00000437340 PRR16Q569H4 304 aa28.73■■■□□ 2.19
CPNE1-216ENST00000437340 KIFC2Q96AC6 838 aa28.73■■■□□ 2.19
CPNE1-216ENST00000437340 LENG9Q96B70 501 aa28.73■■■□□ 2.19
CPNE1-216ENST00000437340 TRIM47Q96LD4 638 aa28.73■■■□□ 2.19
CPNE1-216ENST00000437340 PAXBP1Q9Y5B6 917 aa28.73■■■□□ 2.19
CPNE1-216ENST00000437340 TRIM49BA6NDI0 452 aa28.72■■■□□ 2.19
CPNE1-216ENST00000437340 HIRAP54198 1017 aaPredicted RBP28.72■■■□□ 2.19
CPNE1-216ENST00000437340 PSMD2Q13200 908 aa28.72■■■□□ 2.19
CPNE1-216ENST00000437340 ECM1Q16610 540 aa28.72■■■□□ 2.19
CPNE1-216ENST00000437340 HAUS3Q68CZ6 603 aa28.72■■■□□ 2.19
CPNE1-216ENST00000437340 KCNK18Q7Z418 384 aa28.72■■■□□ 2.19
CPNE1-216ENST00000437340 IRF2BP1Q8IU81 584 aa28.72■■■□□ 2.19
CPNE1-216ENST00000437340 BAG1Q99933 345 aaPredicted RBP28.72■■■□□ 2.19
CPNE1-216ENST00000437340 AKR1B15C9JRZ8 316 aaPredicted RBP28.71■■■□□ 2.19
CPNE1-216ENST00000437340 TUBB4AP04350 444 aa28.71■■■□□ 2.19
CPNE1-216ENST00000437340 PPFIBP1Q86W92 1011 aa28.71■■■□□ 2.19
CPNE1-216ENST00000437340 GJA10Q969M2 543 aa28.71■■■□□ 2.19
CPNE1-216ENST00000437340 PANX2Q96RD6 677 aa28.71■■■□□ 2.19
CPNE1-216ENST00000437340 TRMT1Q9NXH9 659 aaKnown RBP28.71■■■□□ 2.19
CPNE1-216ENST00000437340 GCOM1H8Y6P7 765 aaPredicted RBP28.7■■■□□ 2.19
CPNE1-216ENST00000437340 POLR2MP0CAP2 368 aa28.7■■■□□ 2.19
CPNE1-216ENST00000437340 FCER1AP12319 257 aa28.7■■■□□ 2.19
CPNE1-216ENST00000437340 HOXA13P31271 388 aaPredicted RBP28.7■■■□□ 2.19
CPNE1-216ENST00000437340 GTF2F1P35269 517 aaKnown RBP eCLIP28.7■■■□□ 2.196e-10■■■□□ 14.7
CPNE1-216ENST00000437340 ANGEL2Q5VTE6 544 aaKnown RBP28.7■■■□□ 2.19
CPNE1-216ENST00000437340 ERMNQ8TAM6 284 aa28.7■■■□□ 2.19
CPNE1-216ENST00000437340 DDX12PQ92771 950 aa28.7■■■□□ 2.19
CPNE1-216ENST00000437340 FRMD4AQ9P2Q2 1039 aaPredicted RBP28.7■■■□□ 2.19
CPNE1-216ENST00000437340 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP28.7■■■□□ 2.198e-7■□□□□ 11.3
CPNE1-216ENST00000437340 ATAD5Q96QE3 1844 aa28.7■■■□□ 2.18
CPNE1-216ENST00000437340 ABCB11O95342 1321 aa28.7■■■□□ 2.18
CPNE1-216ENST00000437340 FAM86B1E9PN63 330 aa28.7■■■□□ 2.18
CPNE1-216ENST00000437340 FAM86B2P0C5J1 330 aa28.7■■■□□ 2.18
CPNE1-216ENST00000437340 SPIRE1Q08AE8 756 aa28.7■■■□□ 2.18
CPNE1-216ENST00000437340 ZYXQ15942 572 aaKnown RBP28.7■■■□□ 2.18
CPNE1-216ENST00000437340 CEP135Q66GS9 1140 aa28.7■■■□□ 2.18
CPNE1-216ENST00000437340 KIAA0895Q8NCT3 520 aa28.7■■■□□ 2.18
CPNE1-216ENST00000437340 LPAR1Q92633 364 aa28.7■■■□□ 2.18
CPNE1-216ENST00000437340 PPP1R13BQ96KQ4 1090 aa28.7■■■□□ 2.18
CPNE1-216ENST00000437340 SRRTQ9BXP5 876 aaKnown RBP28.7■■■□□ 2.18
CPNE1-216ENST00000437340 GLIS2Q9BZE0 524 aaPredicted RBP28.7■■■□□ 2.18
CPNE1-216ENST00000437340 BMP2KQ9NSY1 1161 aaPredicted RBP28.7■■■□□ 2.18
CPNE1-216ENST00000437340 CTNND1O60716 968 aaKnown RBP28.69■■■□□ 2.18
CPNE1-216ENST00000437340 EHHADHQ08426 723 aa28.69■■■□□ 2.18
CPNE1-216ENST00000437340 FAM114A1Q8IWE2 563 aa28.69■■■□□ 2.18
CPNE1-216ENST00000437340 CSGALNACT2Q8N6G5 542 aa28.69■■■□□ 2.18
CPNE1-216ENST00000437340 FEZ1Q99689 392 aa28.69■■■□□ 2.18
CPNE1-216ENST00000437340 DUSP9Q99956 384 aaKnown RBP28.69■■■□□ 2.18
CPNE1-216ENST00000437340 ZNF341Q9BYN7 854 aa28.69■■■□□ 2.18
CPNE1-216ENST00000437340 DEFB129Q9H1M3 183 aa28.69■■■□□ 2.18
CPNE1-216ENST00000437340 EHMT1Q9H9B1 1298 aa28.69■■■□□ 2.18
CPNE1-216ENST00000437340 MAGEC2Q9UBF1 373 aaPredicted RBP28.69■■■□□ 2.18
CPNE1-216ENST00000437340 TAL1P17542 331 aaPredicted RBP28.68■■■□□ 2.18
CPNE1-216ENST00000437340 ADKP55263 362 aaKnown RBP28.68■■■□□ 2.18
CPNE1-216ENST00000437340 GOLGA8FQ08AF8 430 aa28.68■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms