RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 VAT1LQ9HCJ6 419 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 CD209Q9NNX6 404 aa12.54□□□□□ -0.4
USP4-205ENST00000431357 ZNF263O14978 683 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 PJA2O43164 708 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 KIF11P52732 1056 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 C2CD5Q86YS7 1000 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 TBC1D22AQ8WUA7 517 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 CRACR2AQ9BSW2 395 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 ARHGAP20Q9P2F6 1191 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 DDX60LQ5H9U9 1706 aaKnown RBP12.53□□□□□ -0.4
USP4-205ENST00000431357 SSU72P8A0A1W2PR75 194 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 AKR1B10O60218 316 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 RNF40O75150 1001 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 SYF2O95926 243 aaKnown RBP12.53□□□□□ -0.4
USP4-205ENST00000431357 MAPK8IP2Q13387 824 aaPredicted RBP12.53□□□□□ -0.4
USP4-205ENST00000431357 FAM98CQ17RN3 349 aaKnown RBP12.53□□□□□ -0.4
USP4-205ENST00000431357 TMEM119Q4V9L6 283 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 PPP4R3AQ6IN85 833 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 AFAP1L1Q8TED9 768 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 MMRN2Q9H8L6 949 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 TSKSQ9UJT2 592 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 HYOU1Q9Y4L1 999 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 DUSP10Q9Y6W6 482 aa12.53□□□□□ -0.4
USP4-205ENST00000431357 TNRC6CQ9HCJ0 1690 aaKnown RBP12.52□□□□□ -0.4
USP4-205ENST00000431357 GAKO14976 1311 aa12.52□□□□□ -0.4
USP4-205ENST00000431357 USP17L5A8MUK1 530 aa12.52□□□□□ -0.4
USP4-205ENST00000431357 PDE2AO00408 941 aaPredicted RBP12.52□□□□□ -0.4
USP4-205ENST00000431357 SLC26A4O43511 780 aa12.52□□□□□ -0.4
USP4-205ENST00000431357 PDHBP11177 359 aa12.52□□□□□ -0.4
USP4-205ENST00000431357 EIF4A3P38919 411 aaKnown RBP12.52□□□□□ -0.4
USP4-205ENST00000431357 MAGEA1P43355 309 aa12.52□□□□□ -0.4
USP4-205ENST00000431357 RHBDL3P58872 404 aa12.52□□□□□ -0.4
USP4-205ENST00000431357 EHHADHQ08426 723 aa12.52□□□□□ -0.4
USP4-205ENST00000431357 NFIXQ14938 502 aa12.52□□□□□ -0.4
USP4-205ENST00000431357 CREG2Q8IUH2 290 aa12.52□□□□□ -0.4
USP4-205ENST00000431357 RNF10Q8N5U6 811 aaKnown RBP12.52□□□□□ -0.4
USP4-205ENST00000431357 SNX29Q8TEQ0 813 aa12.52□□□□□ -0.4
USP4-205ENST00000431357 EEF2KMTQ96G04 330 aa12.52□□□□□ -0.4
USP4-205ENST00000431357 NAP1L4Q99733 375 aaKnown RBP12.52□□□□□ -0.4
USP4-205ENST00000431357 FAM204AQ9H8W3 233 aa12.52□□□□□ -0.4
USP4-205ENST00000431357 TMEM260Q9NX78 707 aa12.52□□□□□ -0.4
USP4-205ENST00000431357 CCNL1Q9UK58 526 aaPredicted RBP12.52□□□□□ -0.4
USP4-205ENST00000431357 FAM184BQ9ULE4 1060 aa12.52□□□□□ -0.4
USP4-205ENST00000431357 ZNF185O15231 689 aa12.52□□□□□ -0.41
USP4-205ENST00000431357 PRPF6O94906 941 aaKnown RBP12.52□□□□□ -0.41
USP4-205ENST00000431357 RFC4P35249 363 aa12.52□□□□□ -0.41
USP4-205ENST00000431357 PDXDC1Q6P996 788 aa12.52□□□□□ -0.41
USP4-205ENST00000431357 KRT26Q7Z3Y9 468 aa12.52□□□□□ -0.41
USP4-205ENST00000431357 CNBD1Q8NA66 436 aa12.52□□□□□ -0.41
USP4-205ENST00000431357 SYN2Q92777 582 aaPredicted RBP12.52□□□□□ -0.41
USP4-205ENST00000431357 HPS3Q969F9 1004 aa12.52□□□□□ -0.41
USP4-205ENST00000431357 UBA5Q9GZZ9 404 aa12.52□□□□□ -0.41
USP4-205ENST00000431357 LUC7LQ9NQ29 371 aaKnown RBP12.52□□□□□ -0.41
USP4-205ENST00000431357 FAM207AQ9NSI2 230 aaPredicted RBP12.52□□□□□ -0.41
USP4-205ENST00000431357 RNF14Q9UBS8 474 aa12.52□□□□□ -0.41
USP4-205ENST00000431357 GNA14O95837 355 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 SNHG28P0DPA3 235 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 GCFC2P16383 781 aaKnown RBP12.51□□□□□ -0.41
USP4-205ENST00000431357 PAFAH1B1P43034 410 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 GPSM2P81274 684 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 TRAPPC3LQ5T215 181 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 LRRC55Q6ZSA7 311 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 RRAGAQ7L523 313 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 DYMQ7RTS9 669 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 CACNA2D4Q7Z3S7 1137 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 MYOCDQ8IZQ8 938 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 BAP1Q92560 729 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 DDX12PQ92771 950 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 RPGRQ92834 1020 aaKnown RBP12.51□□□□□ -0.41
USP4-205ENST00000431357 CEP63Q96MT8 703 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 SELENOOQ9BVL4 669 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 BMP2KQ9NSY1 1161 aaPredicted RBP12.51□□□□□ -0.41
USP4-205ENST00000431357 MTMR4Q9NYA4 1195 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 GGA1Q9UJY5 639 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 ZC3H4Q9UPT8 1303 aaKnown RBP12.51□□□□□ -0.41
USP4-205ENST00000431357 CDK5RAP2Q96SN8 1893 aa12.51□□□□□ -0.41
USP4-205ENST00000431357 PNMA6FA0A0J9YX94 578 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 LRRC53A6NM62 1247 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 SLC37A4O43826 429 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 PHACTR2O75167 634 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 UFL1O94874 794 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 PLEKP08567 350 aaPredicted RBP12.5□□□□□ -0.41
USP4-205ENST00000431357 FKBP3Q00688 224 aaKnown RBP12.5□□□□□ -0.41
USP4-205ENST00000431357 C2orf54Q08AI8 447 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 VPS72Q15906 364 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 GLE1Q53GS7 698 aaKnown RBP12.5□□□□□ -0.41
USP4-205ENST00000431357 SPATA4Q8NEY3 305 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 AENQ8WTP8 325 aaKnown RBP12.5□□□□□ -0.41
USP4-205ENST00000431357 OSBPL9Q96SU4 736 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 TRIM34Q9BYJ4 488 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 NT5C3AQ9H0P0 336 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 CAPN6Q9Y6Q1 641 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 C10orf71Q711Q0 1435 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 KDM3AQ9Y4C1 1321 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 RBAK-RBAKDNI3L0D1 243 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 MOCS3O95396 460 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 TDP2O95551 362 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 ASTE1Q2TB18 679 aaPredicted RBP12.5□□□□□ -0.41
USP4-205ENST00000431357 SLC9C1Q4G0N8 1177 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 GRIPAP1Q4V328 841 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms