RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 PCDHA11Q9Y5I1 949 aa16.89■□□□□ 0.29
SDC1-204ENST00000429035 COL4A4P53420 1690 aaPredicted RBP16.88■□□□□ 0.29
SDC1-204ENST00000429035 KLRF2D3W0D1 207 aa16.88■□□□□ 0.29
SDC1-204ENST00000429035 IQCF3P0C7M6 154 aa16.88■□□□□ 0.29
SDC1-204ENST00000429035 ZNF286BP0CG31 522 aa16.88■□□□□ 0.29
SDC1-204ENST00000429035 GSPT1P15170 499 aaKnown RBP16.88■□□□□ 0.29
SDC1-204ENST00000429035 PDE4AP27815 886 aa16.88■□□□□ 0.29
SDC1-204ENST00000429035 RFC2P35250 354 aa16.88■□□□□ 0.29
SDC1-204ENST00000429035 PTPN11Q06124 597 aaPredicted RBP16.88■□□□□ 0.29
SDC1-204ENST00000429035 TMEM67Q5HYA8 995 aa16.88■□□□□ 0.29
SDC1-204ENST00000429035 TTC22Q5TAA0 569 aa16.88■□□□□ 0.29
SDC1-204ENST00000429035 CCDC62Q6P9F0 684 aa16.88■□□□□ 0.29
SDC1-204ENST00000429035 IL27Q8NEV9 243 aa16.88■□□□□ 0.29
SDC1-204ENST00000429035 VWCEQ96DN2 955 aa16.88■□□□□ 0.29
SDC1-204ENST00000429035 IWS1Q96ST2 819 aa16.88■□□□□ 0.29
SDC1-204ENST00000429035 CERS4Q9HA82 394 aa16.88■□□□□ 0.29
SDC1-204ENST00000429035 DOCK5Q9H7D0 1870 aa16.88■□□□□ 0.29
SDC1-204ENST00000429035 ERICH2A1L162 156 aa16.87■□□□□ 0.29
SDC1-204ENST00000429035 PITPNM1O00562 1244 aa16.87■□□□□ 0.29
SDC1-204ENST00000429035 CA3P07451 260 aa16.87■□□□□ 0.29
SDC1-204ENST00000429035 CASTP20810 708 aaKnown RBP16.87■□□□□ 0.29
SDC1-204ENST00000429035 GDF6Q6KF10 455 aaPredicted RBP16.87■□□□□ 0.29
SDC1-204ENST00000429035 RALYLQ86SE5 291 aaKnown RBP16.87■□□□□ 0.29
SDC1-204ENST00000429035 SLC9A7Q96T83 725 aa16.87■□□□□ 0.29
SDC1-204ENST00000429035 IFIT3O14879 490 aaKnown RBP16.86■□□□□ 0.29
SDC1-204ENST00000429035 NR3C2P08235 984 aa16.86■□□□□ 0.29
SDC1-204ENST00000429035 HOXA13P31271 388 aaPredicted RBP16.86■□□□□ 0.29
SDC1-204ENST00000429035 KCNJ6P48051 423 aa16.86■□□□□ 0.29
SDC1-204ENST00000429035 IRX6P78412 446 aaPredicted RBP16.86■□□□□ 0.29
SDC1-204ENST00000429035 SEC23AQ15436 765 aa16.86■□□□□ 0.29
SDC1-204ENST00000429035 SKIV2LQ15477 1246 aaKnown RBP16.86■□□□□ 0.29
SDC1-204ENST00000429035 DGKDQ16760 1214 aa16.86■□□□□ 0.29
SDC1-204ENST00000429035 DHX37Q8IY37 1157 aaKnown RBP16.86■□□□□ 0.29
SDC1-204ENST00000429035 C7orf31Q8N865 590 aa16.86■□□□□ 0.29
SDC1-204ENST00000429035 RUFY2Q8WXA3 655 aa16.86■□□□□ 0.29
SDC1-204ENST00000429035 PIBF1Q8WXW3 757 aa16.86■□□□□ 0.29
SDC1-204ENST00000429035 KATNAL1Q9BW62 490 aa16.86■□□□□ 0.29
SDC1-204ENST00000429035 MAD2L2Q9UI95 211 aa16.86■□□□□ 0.29
SDC1-204ENST00000429035 PCDHA1Q9Y5I3 950 aa16.86■□□□□ 0.29
SDC1-204ENST00000429035 TCF20Q9UGU0 1960 aaKnown RBP16.86■□□□□ 0.29
SDC1-204ENST00000429035 ZBTB5O15062 677 aa16.85■□□□□ 0.29
SDC1-204ENST00000429035 PPP1R11O60927 126 aaPredicted RBP16.85■□□□□ 0.29
SDC1-204ENST00000429035 PSEN2P49810 448 aa16.85■□□□□ 0.29
SDC1-204ENST00000429035 LRRC8DQ7L1W4 858 aa16.85■□□□□ 0.29
SDC1-204ENST00000429035 CAGE1Q8TC20 777 aa16.85■□□□□ 0.29
SDC1-204ENST00000429035 ZFP91Q96JP5 570 aaPredicted RBP16.85■□□□□ 0.29
SDC1-204ENST00000429035 MAF1Q9H063 256 aa16.85■□□□□ 0.29
SDC1-204ENST00000429035 HDAC6Q9UBN7 1215 aa16.85■□□□□ 0.29
SDC1-204ENST00000429035 DDX41Q9UJV9 622 aaKnown RBP16.85■□□□□ 0.29
SDC1-204ENST00000429035 SUPT16HQ9Y5B9 1047 aaKnown RBP16.85■□□□□ 0.29
SDC1-204ENST00000429035 RFXAPO00287 272 aa16.84■□□□□ 0.29
SDC1-204ENST00000429035 OPLAHO14841 1288 aa16.84■□□□□ 0.29
SDC1-204ENST00000429035 EIF3JO75822 258 aaKnown RBP16.84■□□□□ 0.29
SDC1-204ENST00000429035 HSD17B4P51659 736 aa16.84■□□□□ 0.29
SDC1-204ENST00000429035 PTH1RQ03431 593 aa16.84■□□□□ 0.29
SDC1-204ENST00000429035 MFSD10Q14728 455 aa16.84■□□□□ 0.29
SDC1-204ENST00000429035 GRM4Q14833 912 aa16.84■□□□□ 0.29
SDC1-204ENST00000429035 WTAPQ15007 396 aa16.84■□□□□ 0.29
SDC1-204ENST00000429035 FCHSD1Q86WN1 690 aa16.84■□□□□ 0.29
SDC1-204ENST00000429035 AFAP1L1Q8TED9 768 aa16.84■□□□□ 0.29
SDC1-204ENST00000429035 KAT2BQ92831 832 aa16.84■□□□□ 0.29
SDC1-204ENST00000429035 PIGSQ96S52 555 aa16.84■□□□□ 0.29
SDC1-204ENST00000429035 PDCD2LQ9BRP1 358 aa16.84■□□□□ 0.29
SDC1-204ENST00000429035 GTF2IRD1Q9UHL9 959 aa16.84■□□□□ 0.29
SDC1-204ENST00000429035 U3KPZ7 1027 aaPredicted RBP16.84■□□□□ 0.29
SDC1-204ENST00000429035 PRRC2BQ5JSZ5 2229 aaKnown RBP16.84■□□□□ 0.29
SDC1-204ENST00000429035 KIF28PB7ZC32 967 aa16.83■□□□□ 0.28
SDC1-204ENST00000429035 GTPBP6O43824 516 aaPredicted RBP16.83■□□□□ 0.28
SDC1-204ENST00000429035 GGPS1O95749 300 aa16.83■□□□□ 0.28
SDC1-204ENST00000429035 CYP21A2P08686 494 aa16.83■□□□□ 0.28
SDC1-204ENST00000429035 SELPP16109 830 aa16.83■□□□□ 0.28
SDC1-204ENST00000429035 LAMC2Q13753 1193 aa16.83■□□□□ 0.28
SDC1-204ENST00000429035 SART3Q15020 963 aaKnown RBP16.83■□□□□ 0.28
SDC1-204ENST00000429035 PGM5Q15124 567 aa16.83■□□□□ 0.28
SDC1-204ENST00000429035 KIAA0753Q2KHM9 967 aa16.83■□□□□ 0.28
SDC1-204ENST00000429035 HERC6Q8IVU3 1022 aa16.83■□□□□ 0.28
SDC1-204ENST00000429035 IL31RAQ8NI17 732 aa16.83■□□□□ 0.28
SDC1-204ENST00000429035 PPTC7Q8NI37 304 aa16.83■□□□□ 0.28
SDC1-204ENST00000429035 ARNTL2Q8WYA1 636 aa16.83■□□□□ 0.28
SDC1-204ENST00000429035 DHX38Q92620 1227 aaKnown RBP16.83■□□□□ 0.28
SDC1-204ENST00000429035 SPATA33Q96N06 139 aa16.83■□□□□ 0.28
SDC1-204ENST00000429035 TSPYL2Q9H2G4 693 aaPredicted RBP16.83■□□□□ 0.28
SDC1-204ENST00000429035 SENP2Q9HC62 589 aa16.83■□□□□ 0.28
SDC1-204ENST00000429035 TTC28Q96AY4 2481 aa16.82■□□□□ 0.28
SDC1-204ENST00000429035 CHD9Q3L8U1 2897 aa16.82■□□□□ 0.28
SDC1-204ENST00000429035 PALM3A6NDB9 673 aaPredicted RBP16.82■□□□□ 0.28
SDC1-204ENST00000429035 GCOM1H8Y6P7 765 aaPredicted RBP16.82■□□□□ 0.28
SDC1-204ENST00000429035 TLL1O43897 1013 aa16.82■□□□□ 0.28
SDC1-204ENST00000429035 BAIAP3O94812 1187 aa16.82■□□□□ 0.28
SDC1-204ENST00000429035 F2P00734 622 aa16.82■□□□□ 0.28
SDC1-204ENST00000429035 POLR2MP0CAP2 368 aa16.82■□□□□ 0.28
SDC1-204ENST00000429035 CCND2P30279 289 aa16.82■□□□□ 0.28
SDC1-204ENST00000429035 SESTD1Q86VW0 696 aa16.82■□□□□ 0.28
SDC1-204ENST00000429035 NCOA7Q8NI08 942 aa16.82■□□□□ 0.28
SDC1-204ENST00000429035 ATXN2LQ8WWM7 1075 aaKnown RBP16.82■□□□□ 0.28
SDC1-204ENST00000429035 MTMR8Q96EF0 704 aa16.82■□□□□ 0.28
SDC1-204ENST00000429035 TAF6LQ9Y6J9 622 aa16.82■□□□□ 0.28
SDC1-204ENST00000429035 SPTBN5Q9NRC6 3674 aaKnown RBP16.82■□□□□ 0.28
SDC1-204ENST00000429035 CHD7Q9P2D1 2997 aa16.81■□□□□ 0.28
SDC1-204ENST00000429035 MICAL3Q7RTP6 2002 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms