RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 RIOX1Q9H6W3 641 aa15.91■□□□□ 0.14
LIG1-202ENST00000427526 BLOC1S4Q9NUP1 217 aa15.91■□□□□ 0.14
LIG1-202ENST00000427526 DUSP10Q9Y6W6 482 aa15.91■□□□□ 0.14
LIG1-202ENST00000427526 LRRIQ3A6PVS8 624 aaPredicted RBP15.9■□□□□ 0.14
LIG1-202ENST00000427526 EDIL3O43854 480 aa15.9■□□□□ 0.14
LIG1-202ENST00000427526 GRB10Q13322 594 aa15.9■□□□□ 0.14
LIG1-202ENST00000427526 MUM1L1Q5H9M0 696 aa15.9■□□□□ 0.14
LIG1-202ENST00000427526 PODNQ7Z5L7 613 aa15.9■□□□□ 0.14
LIG1-202ENST00000427526 BIN2Q9UBW5 565 aaPredicted RBP15.9■□□□□ 0.14
LIG1-202ENST00000427526 SEC63Q9UGP8 760 aaKnown RBP15.9■□□□□ 0.14
LIG1-202ENST00000427526 ZNF263O14978 683 aa15.9■□□□□ 0.14
LIG1-202ENST00000427526 NFIAQ12857 509 aa15.9■□□□□ 0.14
LIG1-202ENST00000427526 SOGA3Q5TF21 947 aa15.9■□□□□ 0.14
LIG1-202ENST00000427526 ANO9A1A5B4 782 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 GABPAQ06546 454 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 CLEC10AQ8IUN9 316 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 REXO1Q8N1G1 1221 aaKnown RBP15.89■□□□□ 0.13
LIG1-202ENST00000427526 TEKT1Q969V4 418 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 CALML4Q96GE6 196 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 RPGRIP1Q96KN7 1286 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 VAT1LQ9HCJ6 419 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 SLC39A2Q9NP94 309 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 TMEM260Q9NX78 707 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 STK32BQ9NY57 414 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 PLAGL2Q9UPG8 496 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 MYMKA6NI61 221 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 USP17L5A8MUK1 530 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 TXKP42681 527 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 FXR2P51116 673 aaKnown RBP eCLIP15.89■□□□□ 0.131e-6■■■■□ 25.2
LIG1-202ENST00000427526 CACNB3P54284 484 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 SV2BQ7L1I2 683 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 ZFPM1Q8IX07 1006 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 IQCDQ96DY2 449 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 PNMA5Q96PV4 448 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 RNF216Q9NWF9 866 aaPredicted RBP15.89■□□□□ 0.13
LIG1-202ENST00000427526 VPS18Q9P253 973 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 SIK3Q9Y2K2 1263 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 PVALEFA0A1B0GWK0 134 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 TARSL2A2RTX5 802 aaKnown RBP15.89■□□□□ 0.13
LIG1-202ENST00000427526 AKR1B1P15121 316 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 CRKP46108 304 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 EIF6P56537 245 aaKnown RBP15.89■□□□□ 0.13
LIG1-202ENST00000427526 CYP27A1Q02318 531 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 HHIPL2Q6UWX4 724 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 UBA5Q9GZZ9 404 aa15.89■□□□□ 0.13
LIG1-202ENST00000427526 TNS1Q9HBL0 1735 aaKnown RBP15.89■□□□□ 0.13
LIG1-202ENST00000427526 ECE2O60344 883 aa15.88■□□□□ 0.13
LIG1-202ENST00000427526 VAV2P52735 878 aa15.88■□□□□ 0.13
LIG1-202ENST00000427526 VWA3BQ502W6 1294 aa15.88■□□□□ 0.13
LIG1-202ENST00000427526 FKBP15Q5T1M5 1219 aa15.88■□□□□ 0.13
LIG1-202ENST00000427526 UNC13DQ70J99 1090 aa15.88■□□□□ 0.13
LIG1-202ENST00000427526 VIPAS39Q9H9C1 493 aa15.88■□□□□ 0.13
LIG1-202ENST00000427526 STK17AQ9UEE5 414 aa15.88■□□□□ 0.13
LIG1-202ENST00000427526 IPO7O95373 1038 aaKnown RBP15.88■□□□□ 0.13
LIG1-202ENST00000427526 AOC3Q16853 763 aa15.88■□□□□ 0.13
LIG1-202ENST00000427526 PCMTD1Q96MG8 357 aaPredicted RBP15.88■□□□□ 0.13
LIG1-202ENST00000427526 LRWD1Q9UFC0 647 aa15.88■□□□□ 0.13
LIG1-202ENST00000427526 hCG_1984214I3L0E3 225 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 PLEKP08567 350 aaPredicted RBP15.87■□□□□ 0.13
LIG1-202ENST00000427526 PDHBP11177 359 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 CKAP4Q07065 602 aaKnown RBP15.87■□□□□ 0.13
LIG1-202ENST00000427526 ZNF713Q8N859 430 aaPredicted RBP15.87■□□□□ 0.13
LIG1-202ENST00000427526 C7orf43Q8WVR3 580 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 NDST4Q9H3R1 872 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 ARHGAP20Q9P2F6 1191 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 FAN1Q9Y2M0 1017 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 TULP2O00295 520 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 PDE2AO00408 941 aaPredicted RBP15.87■□□□□ 0.13
LIG1-202ENST00000427526 EPHB6O15197 1021 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 SLC37A4O43826 429 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 MCM3P25205 808 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 LMAN1P49257 510 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 KIF5AQ12840 1032 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 PDIA5Q14554 519 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 CALCRLQ16602 461 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 DACT2Q5SW24 774 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 FAM71BQ8TC56 605 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 CNKSR1Q969H4 720 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 CAPZA3Q96KX2 299 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 CCDC42Q96M95 316 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 SERPINB13Q9UIV8 391 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 SLX4Q8IY92 1834 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 ABCB11O95342 1321 aa15.87■□□□□ 0.13
LIG1-202ENST00000427526 ZNF185O15231 689 aa15.86■□□□□ 0.13
LIG1-202ENST00000427526 LCA5LO95447 670 aa15.86■□□□□ 0.13
LIG1-202ENST00000427526 RBM5P52756 815 aaKnown RBP eCLIP15.86■□□□□ 0.13
LIG1-202ENST00000427526 TCP10Q12799 353 aa15.86■□□□□ 0.13
LIG1-202ENST00000427526 ZSCAN26Q16670 478 aa15.86■□□□□ 0.13
LIG1-202ENST00000427526 KRT26Q7Z3Y9 468 aa15.86■□□□□ 0.13
LIG1-202ENST00000427526 GUF1Q8N442 669 aaKnown RBP15.86■□□□□ 0.13
LIG1-202ENST00000427526 LARP4BQ92615 738 aaKnown RBP15.86■□□□□ 0.13
LIG1-202ENST00000427526 TSGA10Q9BZW7 698 aa15.86■□□□□ 0.13
LIG1-202ENST00000427526 MTMR4Q9NYA4 1195 aa15.86■□□□□ 0.13
LIG1-202ENST00000427526 AARSP49588 968 aaKnown RBP eCLIP15.86■□□□□ 0.132e-6■■■■□ 24
LIG1-202ENST00000427526 EHHADHQ08426 723 aa15.86■□□□□ 0.13
LIG1-202ENST00000427526 STRIP1Q5VSL9 837 aa15.86■□□□□ 0.13
LIG1-202ENST00000427526 LRRC47Q8N1G4 583 aaKnown RBP15.86■□□□□ 0.13
LIG1-202ENST00000427526 MED4Q9NPJ6 270 aa15.86■□□□□ 0.13
LIG1-202ENST00000427526 MACROD2A1Z1Q3 448 aa15.86■□□□□ 0.13
LIG1-202ENST00000427526 SLC20A2Q08357 652 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms