RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 DUX4Q9UBX2 424 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 DDX25Q9UHL0 483 aaKnown RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 TLK1Q9UKI8 766 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 PCDHA7Q9UN72 937 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 PZPP20742 1482 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 KPNA7A9QM74 516 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 KRT37O76014 449 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 HEXIM1O94992 359 aaKnown RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 ILF2Q12905 390 aaKnown RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 KYAT1Q16773 422 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 ZMYM1Q5SVZ6 1142 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 VSTM4Q8IW00 320 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 MAGOHBQ96A72 148 aaKnown RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 SUCLG2Q96I99 432 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 CNOT6LQ96LI5 555 aaKnown RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 MOV10L1Q9BXT6 1211 aaKnown RBP6.61□□□□□ -1.35
SCN1A-203ENST00000409050 TRIM33Q9UPN9 1127 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 ADAMTS12P58397 1594 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 PFASO15067 1338 aa6.61□□□□□ -1.35
SCN1A-203ENST00000409050 FAM187AA6NFU0 413 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 H0YIN7 160 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 SMIM24O75264 130 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 ANXA1P04083 346 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 IFNAR1P17181 557 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 PAMP19021 973 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 ARL4AP40617 200 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 CCNA1P78396 465 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 PDE1BQ01064 536 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 AP3B2Q13367 1082 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 SLC39A6Q13433 755 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 MAPRE2Q15555 327 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 LRRC23Q53EV4 343 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 MMS22LQ6ZRQ5 1243 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 SYDE1Q6ZW31 735 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 VPS39Q96JC1 886 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 PPP1R2P1Q96PQ5 205 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 USP28Q96RU2 1077 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 ALDH8A1Q9H2A2 487 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 DHX36Q9H2U1 1008 aaKnown RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 BATF3Q9NR55 127 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 CPSF1Q10570 1443 aaKnown RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 NCAPD2Q15021 1401 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 E9PMD0 336 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 K7ENM7 598 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 KIAA0391O15091 583 aaKnown RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 HNRNPRO43390 633 aaKnown RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 PFDN1O60925 122 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 MT-ND3P03897 115 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 SERPINB2P05120 415 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 ZSCAN20P17040 1043 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 SERPINB6P35237 376 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 HDAC4P56524 1084 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 PNOCQ13519 176 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 TFDP2Q14188 446 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 PSMD6Q15008 389 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 TAF11Q15544 211 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 FAM160B2Q86V87 743 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 SCG3Q8WXD2 468 aaKnown RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 STAMBPL1Q96FJ0 436 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 YY1AP1Q9H869 796 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 ADD3Q9UEY8 706 aaKnown RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 PRPF3O43395 683 aaKnown RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 CPP00450 1065 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 OCA2Q04671 838 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 WDR75Q8IWA0 830 aaKnown RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 PNMA1Q8ND90 353 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 PDZD8Q8NEN9 1154 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 SCYL1Q96KG9 808 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 CCDC138Q96M89 665 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 ZBTB18Q99592 522 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 TRPV6Q9H1D0 765 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 ARHGAP26Q9UNA1 814 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 MYBL1P10243 752 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 ARHGDIAP52565 204 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 AP3M2P53677 418 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 POLR2FP61218 127 aaKnown RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 RPS8P62241 208 aaKnown RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 DLGAP5Q15398 846 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 ENOSF1Q7L5Y1 443 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 METTL23Q86XA0 190 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 ELOA2Q8IYF1 753 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 ZBTB21Q9ULJ3 1066 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 SRPRBQ9Y5M8 271 aaKnown RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 MAD1L1Q9Y6D9 718 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 TARSL2A2RTX5 802 aaKnown RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 MAP3K10Q02779 954 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 TAP1Q03518 808 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 MAPK8IP2Q13387 824 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 NNTQ13423 1086 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 SPARCL1Q14515 664 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 ARMCX2Q7L311 632 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 CHST3Q7LGC8 479 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 DYMQ7RTS9 669 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 PDIK1LQ8N165 341 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 PDCD7Q8N8D1 485 aaKnown RBP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 FAM227BQ96M60 508 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 NLRC4Q9NPP4 1024 aa6.6□□□□□ -1.35
SCN1A-203ENST00000409050 AATFQ9NY61 560 aaKnown RBP eCLIP6.6□□□□□ -1.35
SCN1A-203ENST00000409050 ANKFY1Q9P2R3 1169 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms