RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 TBC1D5Q92609 795 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 GOLPH3Q9H4A6 298 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 FAM114A2Q9NRY5 505 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 TMEM260Q9NX78 707 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 PCDHA4Q9UN74 947 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 USH1CQ9Y6N9 552 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 CAMTA1Q9Y6Y1 1673 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 PFDN1O60925 122 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 ELF1P32519 619 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 USP14P54578 494 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 SLC20A2Q08357 652 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 PPFIA1Q13136 1202 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 TRAPPC3LQ5T215 181 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 ZNF34Q8IZ26 560 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 NYXQ9GZU5 481 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 HYOU1Q9Y4L1 999 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 FAM169AQ9Y6X4 670 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 ATP2C1P98194 919 aaPredicted RBP13.13□□□□□ -0.31
HMGB1-206ENST00000405805 CYP4A11Q02928 519 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 SNCBQ16143 134 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 LRRC23Q53EV4 343 aaPredicted RBP13.13□□□□□ -0.31
HMGB1-206ENST00000405805 MFSD4BQ5TF39 518 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 PACS2Q86VP3 889 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 TMEM139Q8IV31 216 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 IFT20Q8IY31 132 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 ZBTB10Q96DT7 871 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 PLA2G12BQ9BX93 195 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 TSGA10Q9BZW7 698 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 PCDHA13Q9Y5I0 950 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 COL5A2P05997 1499 aaPredicted RBP13.13□□□□□ -0.31
HMGB1-206ENST00000405805 KLRK1P26718 216 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 ZBED6P86452 979 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 SFMBT2Q5VUG0 894 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 NEK8Q86SG6 692 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 CNBD1Q8NA66 436 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 PHF20Q9BVI0 1012 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 AP1M1Q9BXS5 423 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 TRIM4Q9C037 500 aa13.13□□□□□ -0.31
HMGB1-206ENST00000405805 DCP1AQ9NPI6 582 aaPredicted RBP13.13□□□□□ -0.31
HMGB1-206ENST00000405805 EEF1GP26641 437 aaKnown RBP13.12□□□□□ -0.31
HMGB1-206ENST00000405805 ALX1Q15699 326 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 UBE2SQ16763 222 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 CLEC10AQ8IUN9 316 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 FAM133AQ8N9E0 248 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 COG1Q8WTW3 980 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 NDST4Q9H3R1 872 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 DNAJC5Q9H3Z4 198 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 DDAH1O94760 285 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 CCNE1P24864 410 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 MDM2Q00987 491 aaPredicted RBP13.12□□□□□ -0.31
HMGB1-206ENST00000405805 TCP10Q12799 353 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 TBX2Q13207 712 aaPredicted RBP13.12□□□□□ -0.31
HMGB1-206ENST00000405805 TBC1D10BQ4KMP7 808 aaPredicted RBP13.12□□□□□ -0.31
HMGB1-206ENST00000405805 TBC1D9BQ66K14 1250 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 FBF1Q8TES7 1133 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 WDR19Q8NEZ3 1342 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 LRRC53A6NM62 1247 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 PPFIA4O75335 1185 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 UFL1O94874 794 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 KRT14P02533 472 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 USH1GQ495M9 461 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 DAAM2Q86T65 1068 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 CCDC84Q86UT8 332 aaPredicted RBP13.12□□□□□ -0.31
HMGB1-206ENST00000405805 WDR66Q8TBY9 1149 aa13.12□□□□□ -0.31
HMGB1-206ENST00000405805 ANKRD62A6NC57 917 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 MEIS1O00470 390 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 CHUKO15111 745 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 UBE4AQ14139 1066 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 SYCP3Q8IZU3 236 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 HDAC7Q8WUI4 952 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 MED15Q96RN5 788 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 DMGDHQ9UI17 866 aaKnown RBP13.11□□□□□ -0.31
HMGB1-206ENST00000405805 MINPP1Q9UNW1 487 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 FAM208AQ9UK61 1670 aaKnown RBP13.11□□□□□ -0.31
HMGB1-206ENST00000405805 NNTQ13423 1086 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 RPS6KA1Q15418 735 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 TCP11Q8WWU5 503 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 MYO1AQ9UBC5 1043 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 USP21Q9UK80 565 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 CAMTA2O94983 1202 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 PAX7P23759 505 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 TNNC1P63316 161 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 KRT71Q3SY84 523 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 KRT25Q7Z3Z0 450 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 SH3GL3Q99963 347 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 STK38LQ9Y2H1 464 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 ABCC12Q96J65 1359 aa13.11□□□□□ -0.31
HMGB1-206ENST00000405805 TBCAO75347 108 aaKnown RBP13.1□□□□□ -0.31
HMGB1-206ENST00000405805 TROAPQ12815 778 aa13.1□□□□□ -0.31
HMGB1-206ENST00000405805 ASIC2Q16515 512 aa13.1□□□□□ -0.31
HMGB1-206ENST00000405805 INTS5Q6P9B9 1019 aaKnown RBP13.1□□□□□ -0.31
HMGB1-206ENST00000405805 ZBTB21Q9ULJ3 1066 aa13.1□□□□□ -0.31
HMGB1-206ENST00000405805 PKN1Q16512 942 aa13.1□□□□□ -0.31
HMGB1-206ENST00000405805 PFKFB3Q16875 520 aaPredicted RBP13.1□□□□□ -0.31
HMGB1-206ENST00000405805 ARHGAP44Q17R89 818 aa13.1□□□□□ -0.31
HMGB1-206ENST00000405805 ARMC9Q7Z3E5 817 aa13.1□□□□□ -0.31
HMGB1-206ENST00000405805 ANKRD2Q9GZV1 360 aa13.1□□□□□ -0.31
HMGB1-206ENST00000405805 KIAA1024Q9UPX6 916 aa13.1□□□□□ -0.31
HMGB1-206ENST00000405805 TCP1P17987 556 aaKnown RBP13.1□□□□□ -0.31
HMGB1-206ENST00000405805 CTNNA1P35221 906 aaKnown RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms