RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CIITAP33076 1130 aa20.5■□□□□ 0.87
SDC1-203ENST00000403076 PTGDRQ13258 359 aa20.5■□□□□ 0.87
SDC1-203ENST00000403076 SLC39A14Q15043 492 aa20.5■□□□□ 0.87
SDC1-203ENST00000403076 STXBP2Q15833 593 aa20.5■□□□□ 0.87
SDC1-203ENST00000403076 CSPP1Q1MSJ5 1256 aa20.5■□□□□ 0.87
SDC1-203ENST00000403076 CEP55Q53EZ4 464 aa20.5■□□□□ 0.87
SDC1-203ENST00000403076 LEO1Q8WVC0 666 aaPredicted RBP20.5■□□□□ 0.87
SDC1-203ENST00000403076 SOCS4Q8WXH5 440 aa20.5■□□□□ 0.87
SDC1-203ENST00000403076 MYH15Q9Y2K3 1946 aa20.49■□□□□ 0.87
SDC1-203ENST00000403076 GOLGA6L22H0YM25 854 aa20.49■□□□□ 0.87
SDC1-203ENST00000403076 SPTLC2O15270 562 aa20.49■□□□□ 0.87
SDC1-203ENST00000403076 RGS2P41220 211 aa20.49■□□□□ 0.87
SDC1-203ENST00000403076 PLA2G4DQ86XP0 818 aa20.49■□□□□ 0.87
SDC1-203ENST00000403076 LINC00301Q8NCQ3 95 aa20.49■□□□□ 0.87
SDC1-203ENST00000403076 CD99L2Q8TCZ2 262 aa20.49■□□□□ 0.87
SDC1-203ENST00000403076 MXRA8Q9BRK3 442 aa20.49■□□□□ 0.87
SDC1-203ENST00000403076 WBP1LQ9NX94 342 aa20.49■□□□□ 0.87
SDC1-203ENST00000403076 RCOR1Q9UKL0 485 aa20.49■□□□□ 0.87
SDC1-203ENST00000403076 DIS3Q9Y2L1 958 aaKnown RBP20.49■□□□□ 0.87
SDC1-203ENST00000403076 DDX49Q9Y6V7 483 aaKnown RBP20.49■□□□□ 0.87
SDC1-203ENST00000403076 FAM86B1E9PN63 330 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 SLC37A4O43826 429 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 FAM86B2P0C5J1 330 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 CYP2B6P20813 491 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 MARCKSP29966 332 aaPredicted RBP20.48■□□□□ 0.87
SDC1-203ENST00000403076 MRPS9P82933 396 aaKnown RBP20.48■□□□□ 0.87
SDC1-203ENST00000403076 ARHGEF6Q15052 776 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 PTPAQ15257 358 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 CALCRLQ16602 461 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 JMYQ8N9B5 988 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 CYP2W1Q8TAV3 490 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 KCNG4Q8TDN1 519 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 ERO1AQ96HE7 468 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 FGD4Q96M96 766 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 GJD2Q9UKL4 321 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 ASTN1O14525 1302 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 LOC102724159A0A0B4J2E5 919 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 STAM2O75886 525 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 HOXD10P28358 340 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 PWP2Q15269 919 aaKnown RBP20.48■□□□□ 0.87
SDC1-203ENST00000403076 Q4G0T1 1027 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 NLRX1Q86UT6 975 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 POTEDQ86YR6 584 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 NPLOC4Q8TAT6 608 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 ZNF296Q8WUU4 475 aaPredicted RBP20.48■□□□□ 0.87
SDC1-203ENST00000403076 MBOAT7Q96N66 472 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 UBIAD1Q9Y5Z9 338 aa20.48■□□□□ 0.87
SDC1-203ENST00000403076 TCHHQ07283 1943 aa20.47■□□□□ 0.87
SDC1-203ENST00000403076 MEIS1O00470 390 aa20.47■□□□□ 0.87
SDC1-203ENST00000403076 EIF3JO75822 258 aaKnown RBP20.47■□□□□ 0.87
SDC1-203ENST00000403076 ME1P48163 572 aa20.47■□□□□ 0.87
SDC1-203ENST00000403076 ATP2C1P98194 919 aaPredicted RBP20.47■□□□□ 0.87
SDC1-203ENST00000403076 GNPTABQ3T906 1256 aa20.47■□□□□ 0.87
SDC1-203ENST00000403076 TPRNQ4KMQ1 711 aa20.47■□□□□ 0.87
SDC1-203ENST00000403076 ARMCX2Q7L311 632 aa20.47■□□□□ 0.87
SDC1-203ENST00000403076 ZNF467Q7Z7K2 595 aaPredicted RBP20.47■□□□□ 0.87
SDC1-203ENST00000403076 USP6NLQ92738 828 aa20.47■□□□□ 0.87
SDC1-203ENST00000403076 MAML3Q96JK9 1138 aa20.47■□□□□ 0.87
SDC1-203ENST00000403076 UIMC1Q96RL1 719 aa20.47■□□□□ 0.87
SDC1-203ENST00000403076 TMEM60Q9H2L4 133 aa20.47■□□□□ 0.87
SDC1-203ENST00000403076 MRVI1Q9Y6F6 885 aa20.47■□□□□ 0.87
SDC1-203ENST00000403076 LCTP09848 1927 aa20.46■□□□□ 0.87
SDC1-203ENST00000403076 LAD1O00515 517 aa20.46■□□□□ 0.87
SDC1-203ENST00000403076 HOXC6P09630 235 aa20.46■□□□□ 0.87
SDC1-203ENST00000403076 OR52Z1P0C646 297 aa20.46■□□□□ 0.87
SDC1-203ENST00000403076 ITGB5P18084 799 aa20.46■□□□□ 0.87
SDC1-203ENST00000403076 EDNRBP24530 442 aa20.46■□□□□ 0.87
SDC1-203ENST00000403076 SETQ01105 290 aaPredicted RBP20.46■□□□□ 0.87
SDC1-203ENST00000403076 EEPD1Q7L9B9 569 aa20.46■□□□□ 0.87
SDC1-203ENST00000403076 NIPA1Q7RTP0 329 aa20.46■□□□□ 0.87
SDC1-203ENST00000403076 C4orf32Q8N8J7 132 aa20.46■□□□□ 0.87
SDC1-203ENST00000403076 APBA2Q99767 749 aa20.46■□□□□ 0.87
SDC1-203ENST00000403076 WDR11Q9BZH6 1224 aa20.46■□□□□ 0.87
SDC1-203ENST00000403076 JADE2Q9NQC1 790 aa20.46■□□□□ 0.87
SDC1-203ENST00000403076 DOCK3Q8IZD9 2030 aa20.46■□□□□ 0.87
SDC1-203ENST00000403076 IGLV3-22A0A075B6J6 115 aa20.45■□□□□ 0.86
SDC1-203ENST00000403076 GOLGA6L4A6NEF3 574 aa20.45■□□□□ 0.86
SDC1-203ENST00000403076 PPP6R2O75170 966 aa20.45■□□□□ 0.86
SDC1-203ENST00000403076 FLT3LGP49771 235 aa20.45■□□□□ 0.86
SDC1-203ENST00000403076 MTMR1Q13613 665 aa20.45■□□□□ 0.86
SDC1-203ENST00000403076 SEPT14Q6ZU15 432 aa20.45■□□□□ 0.86
SDC1-203ENST00000403076 TINF2Q9BSI4 451 aa20.45■□□□□ 0.86
SDC1-203ENST00000403076 GABRQQ9UN88 632 aa20.45■□□□□ 0.86
SDC1-203ENST00000403076 MGAMO43451 1857 aa20.44■□□□□ 0.86
SDC1-203ENST00000403076 PRPF40AO75400 957 aaKnown RBP20.44■□□□□ 0.86
SDC1-203ENST00000403076 ARP10275 920 aa20.44■□□□□ 0.86
SDC1-203ENST00000403076 TXKP42681 527 aa20.44■□□□□ 0.86
SDC1-203ENST00000403076 PRKCZQ05513 592 aa20.44■□□□□ 0.86
SDC1-203ENST00000403076 KRI1Q8N9T8 703 aaKnown RBP20.44■□□□□ 0.86
SDC1-203ENST00000403076 MORC4Q8TE76 937 aa20.44■□□□□ 0.86
SDC1-203ENST00000403076 LENG9Q96B70 501 aa20.44■□□□□ 0.86
SDC1-203ENST00000403076 GPRASP2Q96D09 838 aa20.44■□□□□ 0.86
SDC1-203ENST00000403076 INPP4AQ96PE3 977 aaPredicted RBP20.44■□□□□ 0.86
SDC1-203ENST00000403076 KCNH7Q9NS40 1196 aa20.44■□□□□ 0.86
SDC1-203ENST00000403076 PKD2L1Q9P0L9 805 aa20.44■□□□□ 0.86
SDC1-203ENST00000403076 ZNF236Q9UL36 1845 aa20.44■□□□□ 0.86
SDC1-203ENST00000403076 MSH4O15457 936 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 PRPHP41219 470 aa20.43■□□□□ 0.86
SDC1-203ENST00000403076 ARL6IP4Q66PJ3 421 aaKnown RBP20.43■□□□□ 0.86
SDC1-203ENST00000403076 MAMDC4Q6UXC1 1216 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms