RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, human

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGB1-205	ENST00000399494	KAT2B	Q92831	832 aa		33.2	■■■□□ 2.91
HMGB1-205	ENST00000399494	CTAGE1	Q96RT6	745 aa		33.2	■■■□□ 2.91
HMGB1-205	ENST00000399494	SLC9A7	Q96T83	725 aa		33.2	■■■□□ 2.91
HMGB1-205	ENST00000399494	RMDN3	Q96TC7	470 aa		33.2	■■■□□ 2.91
HMGB1-205	ENST00000399494	VAT1L	Q9HCJ6	419 aa		33.2	■■■□□ 2.91
HMGB1-205	ENST00000399494	NOD1	Q9Y239	953 aa		33.2	■■■□□ 2.91
HMGB1-205	ENST00000399494	MRPL11	Q9Y3B7	192 aa	Known RBP	33.2	■■■□□ 2.91
HMGB1-205	ENST00000399494	SESTD1	Q86VW0	696 aa		33.19	■■■□□ 2.9
HMGB1-205	ENST00000399494	FBXO11	Q86XK2	927 aa		33.19	■■■□□ 2.9
HMGB1-205	ENST00000399494	RFXAP	O00287	272 aa		33.18	■■■□□ 2.9
HMGB1-205	ENST00000399494	SGSM2	O43147	1006 aa		33.18	■■■□□ 2.9
HMGB1-205	ENST00000399494	PARP1	P09874	1014 aa	Known RBP	33.18	■■■□□ 2.9
HMGB1-205	ENST00000399494	POU3F3	P20264	500 aa	Predicted RBP	33.18	■■■□□ 2.9
HMGB1-205	ENST00000399494	IMMT	Q16891	758 aa	Known RBP	33.18	■■■□□ 2.9
HMGB1-205	ENST00000399494	DDX41	Q9UJV9	622 aa	Known RBP	33.18	■■■□□ 2.9
HMGB1-205	ENST00000399494	REV3L	O60673	3130 aa		33.17	■■■□□ 2.9
HMGB1-205	ENST00000399494	CAST	P20810	708 aa	Known RBP	33.17	■■■□□ 2.9
HMGB1-205	ENST00000399494	GDF6	Q6KF10	455 aa	Predicted RBP	33.17	■■■□□ 2.9
HMGB1-205	ENST00000399494	CHST3	Q7LGC8	479 aa		33.17	■■■□□ 2.9
HMGB1-205	ENST00000399494	ADAMTS19	Q8TE59	1207 aa		33.17	■■■□□ 2.9
HMGB1-205	ENST00000399494	TRANK1	O15050	2925 aa		33.17	■■■□□ 2.9
HMGB1-205	ENST00000399494	GPNMB	Q14956	572 aa		33.16	■■■□□ 2.9
HMGB1-205	ENST00000399494	ARHGEF16	Q5VV41	709 aa		33.16	■■■□□ 2.9
HMGB1-205	ENST00000399494	HERC6	Q8IVU3	1022 aa		33.16	■■■□□ 2.9
HMGB1-205	ENST00000399494	MICALL1	Q8N3F8	863 aa		33.16	■■■□□ 2.9
HMGB1-205	ENST00000399494	CAGE1	Q8TC20	777 aa		33.16	■■■□□ 2.9
HMGB1-205	ENST00000399494	KRT23	Q9C075	422 aa		33.16	■■■□□ 2.9
HMGB1-205	ENST00000399494	TSPYL2	Q9H2G4	693 aa	Predicted RBP	33.16	■■■□□ 2.9
HMGB1-205	ENST00000399494	CERS4	Q9HA82	394 aa		33.16	■■■□□ 2.9
HMGB1-205	ENST00000399494	DHX16	O60231	1041 aa	Known RBP	33.15	■■■□□ 2.9
HMGB1-205	ENST00000399494	EIF3J	O75822	258 aa	Known RBP	33.15	■■■□□ 2.9
HMGB1-205	ENST00000399494	AFAP1L1	Q8TED9	768 aa		33.15	■■■□□ 2.9
HMGB1-205	ENST00000399494	MTCH2	Q9Y6C9	303 aa		33.15	■■■□□ 2.9
HMGB1-205	ENST00000399494	ARHGEF15	O94989	841 aa		33.14	■■■□□ 2.9
HMGB1-205	ENST00000399494	NR3C2	P08235	984 aa		33.14	■■■□□ 2.9
HMGB1-205	ENST00000399494	EIF2AK2	P19525	551 aa	Known RBP	33.14	■■■□□ 2.9
HMGB1-205	ENST00000399494	CASC1	Q6TDU7	716 aa		33.14	■■■□□ 2.9
HMGB1-205	ENST00000399494	STAG2	Q8N3U4	1231 aa		33.14	■■■□□ 2.9
HMGB1-205	ENST00000399494	CCDC155	Q8N6L0	562 aa		33.14	■■■□□ 2.9
HMGB1-205	ENST00000399494	EMID1	Q96A84	441 aa	Predicted RBP	33.14	■■■□□ 2.9
HMGB1-205	ENST00000399494	PXMP2	Q9NR77	195 aa		33.14	■■■□□ 2.9
HMGB1-205	ENST00000399494	TET1	Q8NFU7	2136 aa		33.14	■■■□□ 2.9
HMGB1-205	ENST00000399494	KIAA1217	Q5T5P2	1943 aa		33.13	■■■□□ 2.89
HMGB1-205	ENST00000399494	EPOP	A6NHQ4	379 aa		33.13	■■■□□ 2.89
HMGB1-205	ENST00000399494	OPLAH	O14841	1288 aa		33.13	■■■□□ 2.89
HMGB1-205	ENST00000399494	BAIAP3	O94812	1187 aa		33.13	■■■□□ 2.89
HMGB1-205	ENST00000399494	CFB	P00751	764 aa		33.13	■■■□□ 2.89
HMGB1-205	ENST00000399494	TAP1	Q03518	808 aa		33.13	■■■□□ 2.89
HMGB1-205	ENST00000399494	DGKD	Q16760	1214 aa		33.13	■■■□□ 2.89
HMGB1-205	ENST00000399494	DHX38	Q92620	1227 aa	Known RBP	33.13	■■■□□ 2.89
HMGB1-205	ENST00000399494	CNNM2	Q9H8M5	875 aa		33.13	■■■□□ 2.89
HMGB1-205	ENST00000399494	TANC1	Q9C0D5	1861 aa		33.13	■■■□□ 2.89
HMGB1-205	ENST00000399494	TRIP12	Q14669	1992 aa	Predicted RBP	33.12	■■■□□ 2.89
HMGB1-205	ENST00000399494	KIF28P	B7ZC32	967 aa		33.12	■■■□□ 2.89
HMGB1-205	ENST00000399494	HSD17B4	P51659	736 aa		33.12	■■■□□ 2.89
HMGB1-205	ENST00000399494	PTH1R	Q03431	593 aa		33.12	■■■□□ 2.89
HMGB1-205	ENST00000399494	UHRF1	Q96T88	793 aa	Predicted RBP	33.12	■■■□□ 2.89
HMGB1-205	ENST00000399494	AMN	Q9BXJ7	453 aa		33.12	■■■□□ 2.89
HMGB1-205	ENST00000399494	HDAC6	Q9UBN7	1215 aa		33.12	■■■□□ 2.89
HMGB1-205	ENST00000399494	GTF2IRD1	Q9UHL9	959 aa		33.12	■■■□□ 2.89
HMGB1-205	ENST00000399494	BMP1	P13497	986 aa		33.11	■■■□□ 2.89
HMGB1-205	ENST00000399494	SELP	P16109	830 aa		33.11	■■■□□ 2.89
HMGB1-205	ENST00000399494	GHRHR	Q02643	423 aa		33.11	■■■□□ 2.89
HMGB1-205	ENST00000399494	RBL2	Q08999	1139 aa		33.11	■■■□□ 2.89
HMGB1-205	ENST00000399494	LAMC2	Q13753	1193 aa		33.11	■■■□□ 2.89
HMGB1-205	ENST00000399494	ESYT1	Q9BSJ8	1104 aa		33.11	■■■□□ 2.89
HMGB1-205	ENST00000399494	UBAC1	Q9BSL1	405 aa		33.11	■■■□□ 2.89
HMGB1-205	ENST00000399494		U3KPZ7	1027 aa	Predicted RBP	33.11	■■■□□ 2.89
HMGB1-205	ENST00000399494	CDC45	O75419	566 aa		33.1	■■■□□ 2.89
HMGB1-205	ENST00000399494	SEC23A	Q15436	765 aa		33.1	■■■□□ 2.89
HMGB1-205	ENST00000399494	IFIT1B	Q5T764	474 aa	Known RBP	33.1	■■■□□ 2.89
HMGB1-205	ENST00000399494	MTMR8	Q96EF0	704 aa		33.1	■■■□□ 2.89
HMGB1-205	ENST00000399494	MRVI1	Q9Y6F6	885 aa		33.1	■■■□□ 2.89
HMGB1-205	ENST00000399494	KLRF2	D3W0D1	207 aa		33.09	■■■□□ 2.89
HMGB1-205	ENST00000399494	GTPBP6	O43824	516 aa	Predicted RBP	33.09	■■■□□ 2.89
HMGB1-205	ENST00000399494	PSEN2	P49810	448 aa		33.09	■■■□□ 2.89
HMGB1-205	ENST00000399494	TFF2	Q03403	129 aa		33.09	■■■□□ 2.89
HMGB1-205	ENST00000399494	LRRC8D	Q7L1W4	858 aa		33.09	■■■□□ 2.89
HMGB1-205	ENST00000399494	IL27	Q8NEV9	243 aa		33.09	■■■□□ 2.89
HMGB1-205	ENST00000399494	ARNTL2	Q8WYA1	636 aa		33.09	■■■□□ 2.89
HMGB1-205	ENST00000399494	HAS3	O00219	553 aa		33.08	■■■□□ 2.89
HMGB1-205	ENST00000399494	PPP1R11	O60927	126 aa	Predicted RBP	33.08	■■■□□ 2.89
HMGB1-205	ENST00000399494	RGS20	O76081	388 aa		33.08	■■■□□ 2.89
HMGB1-205	ENST00000399494	PARN	O95453	639 aa	Known RBP	33.08	■■■□□ 2.89
HMGB1-205	ENST00000399494	KCNJ6	P48051	423 aa		33.08	■■■□□ 2.89
HMGB1-205	ENST00000399494	WDR5	P61964	334 aa	Known RBP	33.08	■■■□□ 2.89
HMGB1-205	ENST00000399494	STOX1	Q6ZVD7	989 aa		33.08	■■■□□ 2.89
HMGB1-205	ENST00000399494	DHX37	Q8IY37	1157 aa	Known RBP	33.08	■■■□□ 2.89
HMGB1-205	ENST00000399494	C7orf31	Q8N865	590 aa		33.08	■■■□□ 2.89
HMGB1-205	ENST00000399494	PPTC7	Q8NI37	304 aa		33.08	■■■□□ 2.89
HMGB1-205	ENST00000399494	ALG1	Q9BT22	464 aa		33.08	■■■□□ 2.89
HMGB1-205	ENST00000399494	MAP3K20	Q9NYL2	800 aa	Known RBP	33.08	■■■□□ 2.89
HMGB1-205	ENST00000399494	MAD2L2	Q9UI95	211 aa		33.08	■■■□□ 2.89
HMGB1-205	ENST00000399494	MYH6	P13533	1939 aa		33.08	■■■□□ 2.89
HMGB1-205	ENST00000399494	XIRP2	A4UGR9	3374 aa		33.07	■■■□□ 2.88
HMGB1-205	ENST00000399494	CXCL10	P02778	98 aa		33.07	■■■□□ 2.88
HMGB1-205	ENST00000399494	CKB	P12277	381 aa		33.07	■■■□□ 2.88
HMGB1-205	ENST00000399494	KRT40	Q6A162	431 aa		33.07	■■■□□ 2.88
HMGB1-205	ENST00000399494	CYB5R4	Q7L1T6	521 aa		33.07	■■■□□ 2.88
HMGB1-205	ENST00000399494	PDCD2L	Q9BRP1	358 aa		33.07	■■■□□ 2.88

Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms