RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 ATP7BP35670 1465 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 RASGRF1Q13972 1273 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 MYLK4Q86YV6 388 aaPredicted RBP12.39□□□□□ -0.43
TTC28-201ENST00000397906 GCNAQ96QF7 691 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 JPH2Q9BR39 696 aaPredicted RBP12.39□□□□□ -0.43
TTC28-201ENST00000397906 DPH5Q9H2P9 285 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 ADGRL3Q9HAR2 1447 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 DYNLT1P63172 113 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 MYO1EQ12965 1108 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 RIC8AQ9NPQ8 531 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 KIAA1468Q9P260 1216 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 DDX41Q9UJV9 622 aaKnown RBP12.39□□□□□ -0.43
TTC28-201ENST00000397906 ABCB11O95342 1321 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 IGSF1Q8N6C5 1336 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 ERVV-1B6SEH8 477 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 SGK1O00141 431 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 NT5C1BQ96P26 610 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 PLEKHF1Q96S99 279 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 COL15A1P39059 1388 aa12.39□□□□□ -0.43
TTC28-201ENST00000397906 KRBA2Q6ZNG9 492 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 MCUQ8NE86 351 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 IGSF3O75054 1194 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 CTTNQ14247 550 aaKnown RBP12.38□□□□□ -0.43
TTC28-201ENST00000397906 SH2D4BQ5SQS7 431 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 CARMIL3Q8ND23 1372 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 CLGNO14967 610 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 R3HDM1Q15032 1099 aaKnown RBP12.38□□□□□ -0.43
TTC28-201ENST00000397906 IMPACTQ9P2X3 320 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 PCDHA7Q9UN72 937 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 ELF1P32519 619 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 GRAMD1CQ8IYS0 662 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 ZSWIM6Q9HCJ5 1215 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 PPP4R1Q8TF05 950 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 ACCSQ96QU6 501 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 MIS12Q9H081 205 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 COPRSQ9NQ92 184 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 DENND3A2RUS2 1198 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 RAPH1Q70E73 1250 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 CPSF3Q9UKF6 684 aaKnown RBP12.38□□□□□ -0.43
TTC28-201ENST00000397906 GOLGA8IPA6NC78 632 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 GOLGA8JA6NMD2 632 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 SFI1A8K8P3 1242 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 GTPBP6O43824 516 aaPredicted RBP12.38□□□□□ -0.43
TTC28-201ENST00000397906 PAK2Q13177 524 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 APOA5Q6Q788 366 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 BANK1Q8NDB2 785 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 CACTINQ8WUQ7 758 aaKnown RBP12.38□□□□□ -0.43
TTC28-201ENST00000397906 TTC36A6NLP5 189 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 CASP2P42575 452 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 MFAP3P55082 362 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 BFSP1Q12934 665 aa12.38□□□□□ -0.43
TTC28-201ENST00000397906 UHMK1Q8TAS1 419 aaKnown RBP12.38□□□□□ -0.43
TTC28-201ENST00000397906 POLR2BP30876 1174 aaKnown RBP12.37□□□□□ -0.43
TTC28-201ENST00000397906 PSMC2P35998 433 aaKnown RBP12.37□□□□□ -0.43
TTC28-201ENST00000397906 MESDQ14696 234 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 CCDC13Q8IYE1 715 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 SNAP23O00161 211 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 ARHGAP6O43182 974 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 KCNQ2O43526 872 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 C1orf228Q6PIY5 440 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 ZNF668Q96K58 619 aaPredicted RBP12.37□□□□□ -0.43
TTC28-201ENST00000397906 PIH1D3Q9NQM4 214 aaKnown RBP12.37□□□□□ -0.43
TTC28-201ENST00000397906 TMTC4Q5T4D3 741 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 GRK7Q8WTQ7 553 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 RAB17Q9H0T7 212 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 ARHGEF5Q12774 1597 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 PFDN6O15212 129 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 PCP11498 1178 aaKnown RBP12.37□□□□□ -0.43
TTC28-201ENST00000397906 PHBP35232 272 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 GDAP1Q8TB36 358 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 ZNF148Q9UQR1 794 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 MAP3K4Q9Y6R4 1608 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 ATP11AP98196 1134 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 NR5A1Q13285 461 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 HEXIM2Q96MH2 286 aaKnown RBP12.37□□□□□ -0.43
TTC28-201ENST00000397906 TSKSQ9UJT2 592 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 CHRNA5P30532 468 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 SNRNP48Q6IEG0 339 aaKnown RBP12.37□□□□□ -0.43
TTC28-201ENST00000397906 ELF2Q15723 593 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 DSTYKQ6XUX3 929 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 ARHGEF1Q92888 912 aaKnown RBP12.37□□□□□ -0.43
TTC28-201ENST00000397906 SNX1Q13596 522 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 SIX6OS1Q8N1H7 587 aa12.37□□□□□ -0.43
TTC28-201ENST00000397906 SUDS3Q9H7L9 328 aaPredicted RBP12.37□□□□□ -0.43
TTC28-201ENST00000397906 RASSF7Q02833 373 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 KIF24Q5T7B8 1368 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 ERVK-7P63135 1459 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 MAGI3Q5TCQ9 1506 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 PIGOQ8TEQ8 1089 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 WDR46O15213 610 aaKnown RBP12.36□□□□□ -0.43
TTC28-201ENST00000397906 IPO11Q9UI26 975 aaKnown RBP12.36□□□□□ -0.43
TTC28-201ENST00000397906 CTNNA1P35221 906 aaKnown RBP12.36□□□□□ -0.43
TTC28-201ENST00000397906 ANKRD13CQ8N6S4 541 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 MOSPD1Q9UJG1 213 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 CYP2D6P10635 497 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 RBM6P78332 1123 aaKnown RBP12.36□□□□□ -0.43
TTC28-201ENST00000397906 CDHR1Q96JP9 859 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 UBE2TQ9NPD8 197 aaPredicted RBP12.36□□□□□ -0.43
TTC28-201ENST00000397906 KRT71Q3SY84 523 aa12.36□□□□□ -0.43
TTC28-201ENST00000397906 HDAC11Q96DB2 347 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms