RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 WDR11Q9BZH6 1224 aa16.99■□□□□ 0.31
COL9A1-204ENST00000370496 SPC25Q9HBM1 224 aa16.99■□□□□ 0.31
COL9A1-204ENST00000370496 TMEM260Q9NX78 707 aa16.99■□□□□ 0.31
COL9A1-204ENST00000370496 KBTBD13C9JR72 458 aa16.98■□□□□ 0.31
COL9A1-204ENST00000370496 DUSP11O75319 330 aaKnown RBP16.98■□□□□ 0.31
COL9A1-204ENST00000370496 EIF3JO75822 258 aaKnown RBP16.98■□□□□ 0.31
COL9A1-204ENST00000370496 PGK1P00558 417 aa16.98■□□□□ 0.31
COL9A1-204ENST00000370496 FOSP01100 380 aaPredicted RBP16.98■□□□□ 0.31
COL9A1-204ENST00000370496 GNPTABQ3T906 1256 aa16.98■□□□□ 0.31
COL9A1-204ENST00000370496 IFFO2Q5TF58 517 aa16.98■□□□□ 0.31
COL9A1-204ENST00000370496 JAKMIP3Q5VZ66 844 aa16.98■□□□□ 0.31
COL9A1-204ENST00000370496 PCNX4Q63HM2 1172 aa16.98■□□□□ 0.31
COL9A1-204ENST00000370496 TLK2Q86UE8 772 aa16.98■□□□□ 0.31
COL9A1-204ENST00000370496 FAM177A1Q8N128 213 aaPredicted RBP16.98■□□□□ 0.31
COL9A1-204ENST00000370496 ARRDC4Q8NCT1 418 aa16.98■□□□□ 0.31
COL9A1-204ENST00000370496 LLPHQ9BRT6 129 aaKnown RBP16.98■□□□□ 0.31
COL9A1-204ENST00000370496 MRVI1Q9Y6F6 885 aa16.98■□□□□ 0.31
COL9A1-204ENST00000370496 STAM2O75886 525 aa16.97■□□□□ 0.31
COL9A1-204ENST00000370496 C6orf222P0C671 652 aaPredicted RBP16.97■□□□□ 0.31
COL9A1-204ENST00000370496 SMPD1P17405 629 aa16.97■□□□□ 0.31
COL9A1-204ENST00000370496 CLK2P49760 499 aaKnown RBP16.97■□□□□ 0.31
COL9A1-204ENST00000370496 FOSBP53539 338 aa16.97■□□□□ 0.31
COL9A1-204ENST00000370496 TRIM29Q14134 588 aa16.97■□□□□ 0.31
COL9A1-204ENST00000370496 MCTP2Q6DN12 878 aa16.97■□□□□ 0.31
COL9A1-204ENST00000370496 IQSEC1Q6DN90 963 aa16.97■□□□□ 0.31
COL9A1-204ENST00000370496 RNF180Q86T96 592 aa16.97■□□□□ 0.31
COL9A1-204ENST00000370496 VSIG10LQ86VR7 867 aa16.97■□□□□ 0.31
COL9A1-204ENST00000370496 TMX3Q96JJ7 454 aa16.97■□□□□ 0.31
COL9A1-204ENST00000370496 PCDHA4Q9UN74 947 aa16.97■□□□□ 0.31
COL9A1-204ENST00000370496 RBM47A0AV96 593 aaKnown RBP16.96■□□□□ 0.31
COL9A1-204ENST00000370496 DNM1LO00429 736 aa16.96■□□□□ 0.31
COL9A1-204ENST00000370496 TXNP10599 105 aaKnown RBP16.96■□□□□ 0.31
COL9A1-204ENST00000370496 HMGN5P82970 282 aaKnown RBP16.96■□□□□ 0.31
COL9A1-204ENST00000370496 LRRC41Q15345 812 aa16.96■□□□□ 0.31
COL9A1-204ENST00000370496 DUSP28Q4G0W2 176 aa16.96■□□□□ 0.31
COL9A1-204ENST00000370496 GJC2Q5T442 439 aaPredicted RBP16.96■□□□□ 0.31
COL9A1-204ENST00000370496 XRRA1Q6P2D8 792 aa16.96■□□□□ 0.31
COL9A1-204ENST00000370496 RASGRP4Q8TDF6 673 aa16.96■□□□□ 0.31
COL9A1-204ENST00000370496 DIS3LQ8TF46 1054 aaKnown RBP16.96■□□□□ 0.31
COL9A1-204ENST00000370496 ZFP91Q96JP5 570 aaPredicted RBP16.96■□□□□ 0.31
COL9A1-204ENST00000370496 AP5M1Q9H0R1 490 aa16.96■□□□□ 0.31
COL9A1-204ENST00000370496 MYH7BA7E2Y1 1941 aa16.96■□□□□ 0.31
COL9A1-204ENST00000370496 NKRFO15226 690 aaKnown RBP eCLIP16.95■□□□□ 0.3
COL9A1-204ENST00000370496 FDPSP14324 419 aaKnown RBP16.95■□□□□ 0.3
COL9A1-204ENST00000370496 SREBF1P36956 1147 aa16.95■□□□□ 0.3
COL9A1-204ENST00000370496 MRPS9P82933 396 aaKnown RBP16.95■□□□□ 0.3
COL9A1-204ENST00000370496 GALNT17Q6IS24 598 aa16.95■□□□□ 0.3
COL9A1-204ENST00000370496 BLIDQ8IZY5 108 aa16.95■□□□□ 0.3
COL9A1-204ENST00000370496 FAM184AQ8NB25 1140 aa16.95■□□□□ 0.3
COL9A1-204ENST00000370496 DAGLBQ8NCG7 672 aa16.95■□□□□ 0.3
COL9A1-204ENST00000370496 OR6J1Q8NGC5 347 aa16.95■□□□□ 0.3
COL9A1-204ENST00000370496 UPF3AQ9H1J1 476 aaKnown RBP16.95■□□□□ 0.3
COL9A1-204ENST00000370496 RNF39Q9H2S5 420 aa16.95■□□□□ 0.3
COL9A1-204ENST00000370496 BRMS1Q9HCU9 246 aa16.95■□□□□ 0.3
COL9A1-204ENST00000370496 RTEL1Q9NZ71 1219 aa16.95■□□□□ 0.3
COL9A1-204ENST00000370496 KCNJ14Q9UNX9 436 aa16.95■□□□□ 0.3
COL9A1-204ENST00000370496 GNEQ9Y223 722 aaKnown RBP16.95■□□□□ 0.3
COL9A1-204ENST00000370496 ADAMTS4O75173 837 aa16.94■□□□□ 0.3
COL9A1-204ENST00000370496 ARIH2O95376 493 aa16.94■□□□□ 0.3
COL9A1-204ENST00000370496 PTGS1P23219 599 aa16.94■□□□□ 0.3
COL9A1-204ENST00000370496 GJA9P57773 515 aa16.94■□□□□ 0.3
COL9A1-204ENST00000370496 KCNV1Q6PIU1 500 aa16.94■□□□□ 0.3
COL9A1-204ENST00000370496 NECAB2Q7Z6G3 386 aa16.94■□□□□ 0.3
COL9A1-204ENST00000370496 NLRX1Q86UT6 975 aa16.94■□□□□ 0.3
COL9A1-204ENST00000370496 PAWRQ96IZ0 340 aaKnown RBP16.94■□□□□ 0.3
COL9A1-204ENST00000370496 PHF20Q9BVI0 1012 aa16.94■□□□□ 0.3
COL9A1-204ENST00000370496 C11orf49Q9H6J7 331 aa16.94■□□□□ 0.3
COL9A1-204ENST00000370496 DOCK5Q9H7D0 1870 aa16.94■□□□□ 0.3
COL9A1-204ENST00000370496 MYADML2A6NDP7 307 aa16.93■□□□□ 0.3
COL9A1-204ENST00000370496 ADAMTS3O15072 1205 aa16.93■□□□□ 0.3
COL9A1-204ENST00000370496 DYNC1LI2O43237 492 aaPredicted RBP16.93■□□□□ 0.3
COL9A1-204ENST00000370496 FIBPO43427 364 aa16.93■□□□□ 0.3
COL9A1-204ENST00000370496 RGS20O76081 388 aa16.93■□□□□ 0.3
COL9A1-204ENST00000370496 ARHGAP4P98171 946 aa16.93■□□□□ 0.3
COL9A1-204ENST00000370496 FSCN1Q16658 493 aaKnown RBP16.93■□□□□ 0.3
COL9A1-204ENST00000370496 LY6KQ17RY6 165 aa16.93■□□□□ 0.3
COL9A1-204ENST00000370496 TMEM63BQ5T3F8 832 aa16.93■□□□□ 0.3
COL9A1-204ENST00000370496 INPP4AQ96PE3 977 aaPredicted RBP16.93■□□□□ 0.3
COL9A1-204ENST00000370496 GJB4Q9NTQ9 266 aa16.93■□□□□ 0.3
COL9A1-204ENST00000370496 KIF3AQ9Y496 699 aa16.93■□□□□ 0.3
COL9A1-204ENST00000370496 GH1P01241 217 aa16.92■□□□□ 0.3
COL9A1-204ENST00000370496 CST5P28325 142 aaPredicted RBP16.92■□□□□ 0.3
COL9A1-204ENST00000370496 KRT2P35908 639 aa16.92■□□□□ 0.3
COL9A1-204ENST00000370496 ZNF76P36508 570 aa16.92■□□□□ 0.3
COL9A1-204ENST00000370496 MNX1P50219 401 aaPredicted RBP16.92■□□□□ 0.3
COL9A1-204ENST00000370496 CPT1AP50416 773 aa16.92■□□□□ 0.3
COL9A1-204ENST00000370496 MTMR1Q13613 665 aa16.92■□□□□ 0.3
COL9A1-204ENST00000370496 BRDTQ58F21 947 aaPredicted RBP16.92■□□□□ 0.3
COL9A1-204ENST00000370496 GNASQ5JWF2 1037 aa16.92■□□□□ 0.3
COL9A1-204ENST00000370496 CCDC62Q6P9F0 684 aa16.92■□□□□ 0.3
COL9A1-204ENST00000370496 PCSK9Q8NBP7 692 aaKnown RBP16.92■□□□□ 0.3
COL9A1-204ENST00000370496 COPS5Q92905 334 aa16.92■□□□□ 0.3
COL9A1-204ENST00000370496 CDHR1Q96JP9 859 aa16.92■□□□□ 0.3
COL9A1-204ENST00000370496 C8orf76Q96K31 380 aa16.92■□□□□ 0.3
COL9A1-204ENST00000370496 Q9Y3F1 56 aa16.92■□□□□ 0.3
COL9A1-204ENST00000370496 CCDC194A0A1B0GVG4 234 aa16.91■□□□□ 0.3
COL9A1-204ENST00000370496 ZEB2O60315 1214 aa16.91■□□□□ 0.3
COL9A1-204ENST00000370496 UBA1P22314 1058 aaKnown RBP16.91■□□□□ 0.3
COL9A1-204ENST00000370496 BEX3Q00994 111 aa16.91■□□□□ 0.3
COL9A1-204ENST00000370496 KRT25Q7Z3Z0 450 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms