RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 SNRNP48Q6IEG0 339 aaKnown RBP12.71□□□□□ -0.37
SYNE1-204ENST00000367248 MB21D2Q8IYB1 491 aaPredicted RBP12.71□□□□□ -0.37
SYNE1-204ENST00000367248 U2AF1L4Q8WU68 220 aaKnown RBP12.71□□□□□ -0.37
SYNE1-204ENST00000367248 IFIH1Q9BYX4 1025 aaKnown RBP12.71□□□□□ -0.37
SYNE1-204ENST00000367248 NEDD4P46934 1319 aa12.71□□□□□ -0.37
SYNE1-204ENST00000367248 TLR3O15455 904 aaKnown RBP12.71□□□□□ -0.37
SYNE1-204ENST00000367248 ATF7P17544 494 aaPredicted RBP12.71□□□□□ -0.37
SYNE1-204ENST00000367248 GSDMBQ8TAX9 411 aa12.71□□□□□ -0.37
SYNE1-204ENST00000367248 DISC1Q9NRI5 854 aa12.71□□□□□ -0.37
SYNE1-204ENST00000367248 ZNF215Q9UL58 517 aaPredicted RBP12.71□□□□□ -0.37
SYNE1-204ENST00000367248 USP17L5A8MUK1 530 aa12.71□□□□□ -0.37
SYNE1-204ENST00000367248 IGSF3O75054 1194 aa12.71□□□□□ -0.37
SYNE1-204ENST00000367248 RSRC2Q7L4I2 434 aaKnown RBP12.71□□□□□ -0.37
SYNE1-204ENST00000367248 RYBPQ8N488 228 aaPredicted RBP12.71□□□□□ -0.37
SYNE1-204ENST00000367248 NRKQ7Z2Y5 1582 aa12.71□□□□□ -0.37
SYNE1-204ENST00000367248 CSF1RP07333 972 aa12.71□□□□□ -0.37
SYNE1-204ENST00000367248 CDC25AP30304 524 aa12.71□□□□□ -0.37
SYNE1-204ENST00000367248 RCAN1P53805 252 aa12.71□□□□□ -0.37
SYNE1-204ENST00000367248 C8orf74Q6P047 294 aa12.71□□□□□ -0.37
SYNE1-204ENST00000367248 PDXDC2PQ6P474 469 aa12.71□□□□□ -0.37
SYNE1-204ENST00000367248 RNF207Q6ZRF8 634 aa12.71□□□□□ -0.37
SYNE1-204ENST00000367248 GSG1L2A8MUP6 293 aa12.71□□□□□ -0.38
SYNE1-204ENST00000367248 ATP2C2O75185 946 aa12.71□□□□□ -0.38
SYNE1-204ENST00000367248 EVCP57679 992 aa12.71□□□□□ -0.38
SYNE1-204ENST00000367248 MRFAP1L1Q96HT8 127 aa12.71□□□□□ -0.38
SYNE1-204ENST00000367248 INO80Q9ULG1 1556 aaPredicted RBP12.71□□□□□ -0.38
SYNE1-204ENST00000367248 APOBEC3FQ8IUX4 373 aaKnown RBP12.71□□□□□ -0.38
SYNE1-204ENST00000367248 KRT222Q8N1A0 295 aa12.71□□□□□ -0.38
SYNE1-204ENST00000367248 RIMBP3CA6NJZ7 1639 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 RIMBP3BA6NNM3 1639 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 RIMBP3Q9UFD9 1639 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 ZBTB5O15062 677 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 NTSR2O95665 410 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 CASC4Q6P4E1 433 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 ARFGAP2Q8N6H7 521 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 PCDHB6Q9Y5E3 794 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 SYCE1Q8N0S2 351 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 C7orf31Q8N865 590 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 ZNRF3Q9ULT6 936 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 PNPLA7Q6ZV29 1317 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 ADKP55263 362 aaKnown RBP12.7□□□□□ -0.38
SYNE1-204ENST00000367248 RPS6KA1Q15418 735 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 CCDC14Q49A88 953 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 PPM1KQ8N3J5 372 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 NEDD1Q8NHV4 660 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 PSMB7Q99436 277 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 WDR19Q8NEZ3 1342 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 ACTN4O43707 911 aaKnown RBP12.7□□□□□ -0.38
SYNE1-204ENST00000367248 RESTQ13127 1097 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 TSTA3Q13630 321 aaPredicted RBP12.7□□□□□ -0.38
SYNE1-204ENST00000367248 ANGEL2Q5VTE6 544 aaKnown RBP12.7□□□□□ -0.38
SYNE1-204ENST00000367248 TAB3Q8N5C8 712 aaPredicted RBP12.7□□□□□ -0.38
SYNE1-204ENST00000367248 CPS1P31327 1500 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 CNTNAP4Q9C0A0 1308 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 FAM117BQ6P1L5 589 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 PEX26Q7Z412 305 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 SH3GLB2Q9NR46 395 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 HESX1Q9UBX0 185 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 SUGT1Q9Y2Z0 365 aa12.7□□□□□ -0.38
SYNE1-204ENST00000367248 MYL1P05976 194 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 NR2F2P24468 414 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 HMGCS2P54868 508 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 CEP57Q86XR8 500 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 ENAHQ8N8S7 591 aaPredicted RBP12.69□□□□□ -0.38
SYNE1-204ENST00000367248 NCOA3Q9Y6Q9 1424 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 NEXMIFQ5QGS0 1516 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 ELF1P32519 619 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 ARL6IP4Q66PJ3 421 aaKnown RBP12.69□□□□□ -0.38
SYNE1-204ENST00000367248 GPT2Q8TD30 523 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 USP17L10C9JJH3 530 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 GTF2F1P35269 517 aaKnown RBP eCLIP12.69□□□□□ -0.38
SYNE1-204ENST00000367248 RCSD1Q6JBY9 416 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 GPR161Q8N6U8 529 aaKnown RBP12.69□□□□□ -0.38
SYNE1-204ENST00000367248 DHTKD1Q96HY7 919 aaPredicted RBP12.69□□□□□ -0.38
SYNE1-204ENST00000367248 PCIF1Q9H4Z3 704 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 HOXC10Q9NYD6 342 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 TSKSQ9UJT2 592 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 NRXN1Q9ULB1 1477 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 GOLGA6CA6NDK9 693 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 GOLGA6BA6NDN3 693 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 GOLGA6DP0CG33 693 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 RIC8AQ9NPQ8 531 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 GOLGA6AQ9NYA3 693 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 GGA3Q9NZ52 723 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 SEPT10Q9P0V9 454 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 PPRC1Q5VV67 1664 aaKnown RBP12.69□□□□□ -0.38
SYNE1-204ENST00000367248 TOB2Q14106 344 aaPredicted RBP12.69□□□□□ -0.38
SYNE1-204ENST00000367248 SAMD7Q7Z3H4 446 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 PRPF38AQ8NAV1 312 aaKnown RBP12.69□□□□□ -0.38
SYNE1-204ENST00000367248 GANCQ8TET4 914 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 CEP95Q96GE4 821 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 ERO1AQ96HE7 468 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 TRIM31Q9BZY9 425 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 DAGLAQ9Y4D2 1042 aa12.69□□□□□ -0.38
SYNE1-204ENST00000367248 ABCB4P21439 1286 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 POLR2FP61218 127 aaKnown RBP12.68□□□□□ -0.38
SYNE1-204ENST00000367248 SRPRBQ9Y5M8 271 aaKnown RBP12.68□□□□□ -0.38
SYNE1-204ENST00000367248 CRCPO75575 148 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 PSMC4P43686 418 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 TFAMQ00059 246 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms