RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 RNF135Q8IUD6 432 aa10.15□□□□□ -0.78
HMGB1P39-201ENST00000366304 GMCL1P1Q8NEA9 526 aa10.15□□□□□ -0.78
HMGB1P39-201ENST00000366304 OR6J1Q8NGC5 347 aa10.15□□□□□ -0.78
HMGB1P39-201ENST00000366304 PABPC5Q96DU9 382 aaKnown RBP10.15□□□□□ -0.78
HMGB1P39-201ENST00000366304 OSBPL7Q9BZF2 842 aa10.15□□□□□ -0.78
HMGB1P39-201ENST00000366304 MTMR4Q9NYA4 1195 aa10.15□□□□□ -0.78
HMGB1P39-201ENST00000366304 PRKAG3Q9UGI9 489 aa10.15□□□□□ -0.78
HMGB1P39-201ENST00000366304 A6NJR5 290 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 GSG1L2A8MUP6 293 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 ARIH2O95376 493 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 RLBP1P12271 317 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 BMP3P12645 472 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 SELPP16109 830 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 GTF2F1P35269 517 aaKnown RBP eCLIP10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 PTPN5P54829 565 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 VCPP55072 806 aaKnown RBP10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 CHMP4BP1P59074 171 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 BFSP2Q13515 415 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 BAATQ14032 418 aaPredicted RBP10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 PTGISQ16647 500 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 TRIM71Q2Q1W2 868 aaKnown RBP10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 EPC2Q52LR7 807 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 CEP85Q6P2H3 762 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 LRRC8DQ7L1W4 858 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 BANK1Q8NDB2 785 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 AFAP1L1Q8TED9 768 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 KAT2BQ92831 832 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 EDAQ92838 391 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 PAG1Q9NWQ8 432 aa10.14□□□□□ -0.79
HMGB1P39-201ENST00000366304 TMEM221A6NGB7 291 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 M0R296 226 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 NFIBO00712 420 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 LGR5O75473 907 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 RGS20O76081 388 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 CKBP12277 381 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 CPT1AP50416 773 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 ALDH5A1P51649 535 aaPredicted RBP10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 HTRA4P83105 476 aaPredicted RBP10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 HIC1Q14526 733 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 SMAD2Q15796 467 aaKnown RBP10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 CTC1Q2NKJ3 1217 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 LRRFIP1Q32MZ4 808 aaKnown RBP10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 SBK1Q52WX2 424 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 NSMFQ6X4W1 530 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 EP400NLQ6ZTU2 488 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 BMP8AQ7Z5Y6 402 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 RPAINQ86UA6 219 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 RHPN1Q8TCX5 695 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 STRBPQ96SI9 672 aaKnown RBP10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 BOLA2Q9H3K6 86 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 EPB41L4AQ9HCS5 686 aaPredicted RBP10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 MYO7AQ13402 2215 aa10.13□□□□□ -0.79
HMGB1P39-201ENST00000366304 ABHD14A-ACY1A0A1B0GW23 586 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 MINDY4BA8MYZ0 360 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 H3BNC9 293 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 IPO8O15397 1037 aaKnown RBP10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 LINC01565O15544 149 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 MBTPS2O43462 519 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 TBX10O75333 385 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 MCCP23508 829 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 STAT2P52630 851 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 FOSBP53539 338 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 LSM11P83369 360 aaKnown RBP eCLIP10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 ZNF200P98182 395 aaPredicted RBP10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 PTPN11Q06124 597 aaPredicted RBP10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 RBL2Q08999 1139 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 HYAL1Q12794 435 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 UBE3CQ15386 1083 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 TKFCQ3LXA3 575 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 SLC30A10Q6XR72 485 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 TRIM67Q6ZTA4 783 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 KCTD1Q719H9 257 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 RPAP2Q8IXW5 612 aaPredicted RBP10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 CAGE1Q8TC20 777 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 STAG1Q8WVM7 1258 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 MKNK2Q9HBH9 465 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 CLDND1Q9NY35 253 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 ARPP21Q9UBL0 812 aaPredicted RBP10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 PRR12Q9ULL5 1215 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 KMT2EQ8IZD2 1858 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 RIF1Q5UIP0 2472 aaKnown RBP10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 COL4A6Q14031 1691 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 GVINP1Q7Z2Y8 2422 aa10.12□□□□□ -0.79
HMGB1P39-201ENST00000366304 PTPRZ1P23471 2315 aaPredicted RBP10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 ARHGAP33O14559 1287 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 TTLL1O95922 423 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 LINC00271P0C7V0 271 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 EDNRBP24530 442 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 PSEN2P49810 448 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 MMRN1Q13201 1228 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 GPM6BQ13491 265 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 TIGD5Q53EQ6 642 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 ZNF618Q5T7W0 954 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 ASCL5Q7RTU5 278 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 SESTD1Q86VW0 696 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 AMOTL1Q8IY63 956 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 CLEC4DQ8WXI8 215 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 PBXIP1Q96AQ6 731 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 GMCL1Q96IK5 515 aa10.11□□□□□ -0.79
HMGB1P39-201ENST00000366304 BCL11AQ9H165 835 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms