RNA–Protein interactions for RNA: ENST00000355238.10

SYNCRIP-201, Transcript of synaptotagmin binding cytoplasmic RNA interacting protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SYNCRIP, Length 6,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNCRIP-201ENST00000355238 PRPF6O94906 941 aaKnown RBP13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 RWDD2BP57060 319 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 SNX1Q13596 522 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 FAM178BQ8IXR5 827 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 SMYD4Q8IYR2 804 aaPredicted RBP13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 CMTR1Q8N1G2 835 aaKnown RBP13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 PDHA1P08559 390 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 CA4P22748 312 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 TRIM50Q86XT4 487 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 MB21D1Q8N884 522 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 INTUQ9ULD6 942 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 ARHGEF10O15013 1369 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 TARSL2A2RTX5 802 aaKnown RBP13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 CCNE1P24864 410 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 TBK1Q9UHD2 729 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 MEFVO15553 781 aaPredicted RBP13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 TTI1O43156 1089 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 HSPA8P11142 646 aaKnown RBP13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 PCYT1AP49585 367 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 NR1H3Q13133 447 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 DYDC2Q96IM9 177 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 TRIM55Q9BYV6 548 aa13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 SRPRBQ9Y5M8 271 aaKnown RBP13.78□□□□□ -0.2
SYNCRIP-201ENST00000355238 EEF1B2P24534 225 aaKnown RBP13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 ELF1P32519 619 aa13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 EIF6P56537 245 aaKnown RBP13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 EIF4A1P60842 406 aaKnown RBP13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 MAP7D3Q8IWC1 876 aa13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 LARP4BQ92615 738 aaKnown RBP13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 STAMBPL1Q96FJ0 436 aa13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 OSBPL1AQ9BXW6 950 aa13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 ZC4H2Q9NQZ6 224 aa13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 PCDH11XQ9BZA7 1347 aa13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 PCDH11YQ9BZA8 1340 aa13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 GAS7O60861 476 aa13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 IL2RBP14784 551 aa13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 OCA2Q04671 838 aa13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 CARD10Q9BWT7 1032 aa13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 ZNF521Q96K83 1311 aa13.77□□□□□ -0.2
SYNCRIP-201ENST00000355238 H0YCG3 227 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 MYCNP04198 464 aaPredicted RBP13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 MAPK4P31152 587 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 PTK2Q05397 1052 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 VIPAS39Q9H9C1 493 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 PSD3Q9NYI0 1048 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 H0Y3Z8 333 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 USP14P54578 494 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 ART3Q13508 389 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 OTUD6AQ7L8S5 288 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 ATP6V1G3Q96LB4 118 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 PTPRTO14522 1441 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 CYP21A2P08686 494 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 KRT19P08727 400 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 NAA30Q147X3 362 aaPredicted RBP13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 KRT31Q15323 416 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 C16orf87Q6PH81 154 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 COG1Q8WTW3 980 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 CYTH2Q99418 400 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 EYA3Q99504 573 aa13.77□□□□□ -0.21
SYNCRIP-201ENST00000355238 FTOQ9C0B1 505 aaKnown RBP eCLIP13.77□□□□□ -0.216e-27■■■■■ 35.1
SYNCRIP-201ENST00000355238 H7C0C1 242 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 DDX39AO00148 427 aaKnown RBP13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 NR2F2P24468 414 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 ATP5OP48047 213 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 GABPAQ06546 454 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 FAM47AQ5JRC9 791 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 APOA5Q6Q788 366 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 UNC5CLQ8IV45 518 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 ZNF653Q96CK0 615 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 FAM167BQ9BTA0 163 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 UPF3AQ9H1J1 476 aaKnown RBP13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 CACYBPQ9HB71 228 aaKnown RBP13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 MAST3O60307 1309 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 IQANK1A0A1B0GTG1 560 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 COBLO75128 1261 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 PRPF31Q8WWY3 499 aaKnown RBP13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 FAM81BQ96LP2 452 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 IRAK4Q9NWZ3 460 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 DDX25Q9UHL0 483 aaKnown RBP13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 MID2Q9UJV3 735 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 ECE1P42892 770 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 CYP27A1Q02318 531 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 ZMYM1Q5SVZ6 1142 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 FAM133AQ8N9E0 248 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 HDAC11Q96DB2 347 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 JAG2Q9Y219 1238 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 PLXNC1O60486 1568 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 SYCP2Q9BX26 1530 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 K7ENM7 598 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 PSMC2P35998 433 aaKnown RBP13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 CHMP6Q96FZ7 201 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 ABHD10Q9NUJ1 306 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 MAN1A2O60476 641 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 MMP1P03956 469 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 KCNJ6P48051 423 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 MDM2Q00987 491 aaPredicted RBP13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 ZFP69BQ9UJL9 534 aa13.76□□□□□ -0.21
SYNCRIP-201ENST00000355238 ACTN1P12814 892 aa13.75□□□□□ -0.21
SYNCRIP-201ENST00000355238 MAGOHP61326 146 aaKnown RBP13.75□□□□□ -0.21
SYNCRIP-201ENST00000355238 AP2B1P63010 937 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms