RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 GCOM1H8Y6P7 765 aaPredicted RBP7.5□□□□□ -1.21
VPS39-202ENST00000348544 SNAP23O00161 211 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 DNAJC8O75937 253 aaPredicted RBP7.5□□□□□ -1.21
VPS39-202ENST00000348544 PDE8BO95263 885 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 ATP6V1G2O95670 118 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 PAEPP09466 180 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 MYZAPP0CAP1 466 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 FCER1AP12319 257 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 ERCC3P19447 782 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 TROAPQ12815 778 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 GRIK3Q13003 919 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 NAA25Q14CX7 972 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 HGSNATQ68CP4 663 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 LRIG3Q6UXM1 1119 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 TMTC3Q6ZXV5 915 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 SPATA5Q8NB90 893 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 HVCN1Q96D96 273 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 STAMBPL1Q96FJ0 436 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 NOX5Q96PH1 765 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 NOD2Q9HC29 1040 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 CNNM1Q9NRU3 951 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 KCPQ6ZWJ8 1503 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 UBR2Q8IWV8 1755 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 TRPM3Q9HCF6 1732 aaPredicted RBP7.49□□□□□ -1.21
VPS39-202ENST00000348544 PALMO75781 387 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 DRD4P21917 467 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 SLC8A1P32418 973 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 TRAPPC10P48553 1259 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 ARL6IP4Q66PJ3 421 aaKnown RBP7.49□□□□□ -1.21
VPS39-202ENST00000348544 RRAGAQ7L523 313 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 DDX42Q86XP3 938 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS39-202ENST00000348544 EGFL6Q8IUX8 553 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 FMNL3Q8IVF7 1028 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 CACNA2D3Q8IZS8 1091 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 SRBD1Q8N5C6 995 aaKnown RBP7.49□□□□□ -1.21
VPS39-202ENST00000348544 ARFGAP2Q8N6H7 521 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 MAB21L3Q8N8X9 362 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 MIGA1Q8NAN2 632 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 PROCA1Q8NCQ7 364 aaPredicted RBP7.49□□□□□ -1.21
VPS39-202ENST00000348544 HELBQ8NG08 1087 aaPredicted RBP7.49□□□□□ -1.21
VPS39-202ENST00000348544 HPS3Q969F9 1004 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 TBC1D31Q96DN5 1066 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 TMEM60Q9H2L4 133 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 TAF1DQ9H5J8 278 aaPredicted RBP7.49□□□□□ -1.21
VPS39-202ENST00000348544 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS39-202ENST00000348544 RNF14Q9UBS8 474 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 PNPLA7Q6ZV29 1317 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 PLCH1Q4KWH8 1693 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 MINDY4BA8MYZ0 360 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 PPIP5K2O43314 1243 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 UQCRFS1P1P0C7P4 283 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 FLT3P36888 993 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 MAP3K12Q12852 859 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 PPP2R5BQ15173 497 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 HLFQ16534 295 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 KLHL7Q8IXQ5 586 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 SDR42E1Q8WUS8 393 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 ZSCAN10Q96SZ4 725 aaPredicted RBP7.49□□□□□ -1.21
VPS39-202ENST00000348544 NACAP1Q9BZK3 213 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 ISCUQ9H1K1 167 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 SEMA6BQ9H3T3 888 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 TMEM59LQ9UK28 342 aa7.49□□□□□ -1.21
VPS39-202ENST00000348544 COL22A1Q8NFW1 1626 aaPredicted RBP7.49□□□□□ -1.21
VPS39-202ENST00000348544 TNS3Q68CZ2 1445 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 CYP2D7A0A087X1C5 515 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 GRID2IPA4D2P6 1211 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 GOLGA6L10A6NI86 522 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 BHMG1C9JSJ3 638 aaPredicted RBP7.48□□□□□ -1.21
VPS39-202ENST00000348544 FGFR2P21802 821 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 GBP2P32456 591 aaPredicted RBP7.48□□□□□ -1.21
VPS39-202ENST00000348544 SLC8A3P57103 927 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 NLRP5P59047 1200 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 PPP2R2AP63151 447 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 IFFO1Q0D2I5 559 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 HLTFQ14527 1009 aaKnown RBP eCLIP7.48□□□□□ -1.21
VPS39-202ENST00000348544 VWA3BQ502W6 1294 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 PDXDC1Q6P996 788 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 ADGRA1Q86SQ6 560 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 FAM114A1Q8IWE2 563 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 THEMISQ8N1K5 641 aaPredicted RBP7.48□□□□□ -1.21
VPS39-202ENST00000348544 RNF10Q8N5U6 811 aaKnown RBP7.48□□□□□ -1.21
VPS39-202ENST00000348544 ZBTB38Q8NAP3 1195 aaPredicted RBP7.48□□□□□ -1.21
VPS39-202ENST00000348544 USP38Q8NB14 1042 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 RASGRP4Q8TDF6 673 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 CUL5Q93034 780 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 NDST4Q9H3R1 872 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 RNF41Q9H4P4 317 aaPredicted RBP7.48□□□□□ -1.21
VPS39-202ENST00000348544 MMRN2Q9H8L6 949 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 EBF2Q9HAK2 575 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 TSKSQ9UJT2 592 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 FLT1P17948 1338 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 EME2A4GXA9 379 aaPredicted RBP7.48□□□□□ -1.21
VPS39-202ENST00000348544 ORC4O43929 436 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 TLR2O60603 784 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 GHRP10912 638 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 KLRC1P26715 233 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 CTNNA1P35221 906 aaKnown RBP7.48□□□□□ -1.21
VPS39-202ENST00000348544 EHHADHQ08426 723 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 PDE4DQ08499 809 aa7.48□□□□□ -1.21
VPS39-202ENST00000348544 MYO1EQ12965 1108 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms