RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 SRRDQ9UH36 339 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 PCDHB11Q9Y5F2 797 aa9.3□□□□□ -0.92
HMGB1-203ENST00000341423 MYO5CQ9NQX4 1742 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 GNSP15586 552 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 HERVK_113P62684 666 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 PLD1Q13393 1074 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 DTHD1Q6ZMT9 781 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 RAB3IL1Q8TBN0 382 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 MIR1-1HGQ9H1L0 117 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 ABI2Q9NYB9 513 aaPredicted RBP9.29□□□□□ -0.92
HMGB1-203ENST00000341423 SEPT3Q9UH03 358 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 PRG3Q9Y2Y8 225 aaPredicted RBP9.29□□□□□ -0.92
HMGB1-203ENST00000341423 USP31Q70CQ4 1352 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 POMCP01189 267 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 ITGA4P13612 1032 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 MYSM1Q5VVJ2 828 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 KCTD1Q719H9 257 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 CDV3Q9UKY7 258 aaKnown RBP9.29□□□□□ -0.92
HMGB1-203ENST00000341423 ABCB11O95342 1321 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 SYNGAP1Q96PV0 1343 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 GLI2P10070 1586 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 IKBKBO14920 756 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 PCP11498 1178 aaKnown RBP9.29□□□□□ -0.92
HMGB1-203ENST00000341423 ERCC3P19447 782 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 KCNH2Q12809 1159 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 PDZD4Q76G19 769 aaPredicted RBP9.29□□□□□ -0.92
HMGB1-203ENST00000341423 APPL2Q8NEU8 664 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 ODF2LQ9ULJ1 636 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 PRDM15P57071 1507 aaPredicted RBP9.29□□□□□ -0.92
HMGB1-203ENST00000341423 HUS1O60921 280 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 KRT5P13647 590 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 KRT2P35908 639 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 C21orf59P57076 290 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 TNNI3KQ59H18 835 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 MYCT1Q8N699 235 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 KIFAP3Q92845 792 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 APOL5Q9BWW9 433 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 MROH7-TTC4A0A0A0MT08 1334 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 CLASP1Q7Z460 1538 aa9.29□□□□□ -0.92
HMGB1-203ENST00000341423 KLRF2D3W0D1 207 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 GPAA1O43292 621 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 CYP2C8P10632 490 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 RALAP11233 206 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 FERP16591 822 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 HLFQ16534 295 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 ITIH5Q86UX2 942 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 PNMA1Q8ND90 353 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 SKA2Q8WVK7 121 aaPredicted RBP9.28□□□□□ -0.92
HMGB1-203ENST00000341423 SSH1Q8WYL5 1049 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 KANSL3Q9P2N6 904 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 ITKQ08881 620 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 SLFN12Q8IYM2 578 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 CNNM3Q8NE01 707 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 DCAF4Q8WV16 495 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 SCG3Q8WXD2 468 aaKnown RBP9.28□□□□□ -0.92
HMGB1-203ENST00000341423 CUEDC2Q9H467 287 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 EEF2P13639 858 aaKnown RBP9.28□□□□□ -0.92
HMGB1-203ENST00000341423 ARID4AP29374 1257 aaPredicted RBP9.28□□□□□ -0.92
HMGB1-203ENST00000341423 RTP1P59025 263 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 SUZ12Q15022 739 aaKnown RBP9.28□□□□□ -0.92
HMGB1-203ENST00000341423 BEST2Q8NFU1 509 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 USP26Q9BXU7 913 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 ITM2BQ9Y287 266 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 POLRMTO00411 1230 aaKnown RBP9.28□□□□□ -0.92
HMGB1-203ENST00000341423 ZC3H11AO75152 810 aaKnown RBP eCLIP9.28□□□□□ -0.92
HMGB1-203ENST00000341423 GGPS1O95749 300 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 CLTBP09497 229 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 IL13P35225 146 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 EPHB3P54753 998 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 PPARAQ07869 468 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 TEAD4Q15561 434 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 FMNL3Q8IVF7 1028 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 EMSYQ7Z589 1322 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 GSTTP1A0A1W2PQM5 241 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 ALDH2P05091 517 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 LRCH2Q5VUJ6 765 aa9.28□□□□□ -0.92
HMGB1-203ENST00000341423 DCP1BQ8IZD4 617 aaKnown RBP9.28□□□□□ -0.92
HMGB1-203ENST00000341423 ADGRL2O95490 1459 aa9.27□□□□□ -0.92
HMGB1-203ENST00000341423 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.27□□□□□ -0.92
HMGB1-203ENST00000341423 CLUL1Q15846 466 aa9.27□□□□□ -0.92
HMGB1-203ENST00000341423 TDRD12Q587J7 1177 aaKnown RBP9.27□□□□□ -0.92
HMGB1-203ENST00000341423 LLGL2Q6P1M3 1020 aa9.27□□□□□ -0.92
HMGB1-203ENST00000341423 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.27□□□□□ -0.92
HMGB1-203ENST00000341423 FAM196BA6NMK8 535 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 ADH1AP07327 375 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 TTC23LQ6PF05 361 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 RBM23Q86U06 439 aaKnown RBP9.27□□□□□ -0.93
HMGB1-203ENST00000341423 OOSP2Q86WS3 158 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 EFCAB13Q8IY85 973 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 DBNDD2Q9BQY9 259 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 HPCAL4Q9UM19 191 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 MRPS23Q9Y3D9 190 aaKnown RBP9.27□□□□□ -0.93
HMGB1-203ENST00000341423 GOLGA6L9A6NEM1 432 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 SFI1A8K8P3 1242 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 KCNA5P22460 613 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 TYRO3Q06418 890 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 FSCN1Q16658 493 aaKnown RBP9.27□□□□□ -0.93
HMGB1-203ENST00000341423 TMEM31Q5JXX7 168 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 OTOP3Q7RTS5 596 aa9.27□□□□□ -0.93
HMGB1-203ENST00000341423 SIX6OS1Q8N1H7 587 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms