RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 BFSP1Q12934 665 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 RPS6KA2Q15349 733 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 DOK7Q18PE1 504 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 EPHA10Q5JZY3 1008 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 KCTD1Q719H9 257 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 SYNE4Q8N205 404 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 ENOX1Q8TC92 643 aaKnown RBP9.46□□□□□ -0.9
RTN3-202ENST00000339997 PAGE5Q96GU1 130 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 ANKRD2Q9GZV1 360 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 METTL14Q9HCE5 456 aaKnown RBP9.46□□□□□ -0.9
RTN3-202ENST00000339997 ANKFY1Q9P2R3 1169 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 TNRQ92752 1358 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 PLEKHA8P1O95397 391 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 MAGEA9P43362 315 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 SNAP25P60880 206 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 RBBP5Q15291 538 aaKnown RBP9.46□□□□□ -0.9
RTN3-202ENST00000339997 TBCKQ8TEA7 893 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 RMDN2Q96LZ7 410 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 DDX47Q9H0S4 455 aaKnown RBP9.46□□□□□ -0.9
RTN3-202ENST00000339997 PCDHA13Q9Y5I0 950 aa9.46□□□□□ -0.9
RTN3-202ENST00000339997 PP2D1A8MPX8 630 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 SGK1O00141 431 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 MYO1FO00160 1098 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 FGGP02679 453 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 CTSWP56202 376 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 RPS8P62241 208 aaKnown RBP9.45□□□□□ -0.9
RTN3-202ENST00000339997 BEND6Q5SZJ8 279 aaPredicted RBP9.45□□□□□ -0.9
RTN3-202ENST00000339997 LCA5Q86VQ0 697 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 LARP4BQ92615 738 aaKnown RBP9.45□□□□□ -0.9
RTN3-202ENST00000339997 DYDC2Q96IM9 177 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 MMS19Q96T76 1030 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 PAGR1Q9BTK6 254 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 PPP1R9AQ9ULJ8 1098 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 PCDHA1Q9Y5I3 950 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 LAMC1P11047 1609 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 MFAP3LO75121 409 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 ZSCAN20P17040 1043 aaPredicted RBP9.45□□□□□ -0.9
RTN3-202ENST00000339997 TMED1Q13445 227 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 XKR9Q5GH70 373 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 LGSNQ5TDP6 509 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 MCTP2Q6DN12 878 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 MMS22LQ6ZRQ5 1243 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 WHAMMQ8TF30 809 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 HEMGNQ9BXL5 484 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 USP40Q9NVE5 1235 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 ZBBXA8MT70 800 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 HOXB7P09629 217 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 ALAS1P13196 640 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 PLCG1P19174 1290 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 GFPT1Q06210 699 aaPredicted RBP9.45□□□□□ -0.9
RTN3-202ENST00000339997 MTM1Q13496 603 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 FAM182BQ5T319 152 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 TMC4Q7Z404 712 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 METTL13Q8N6R0 699 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 KDRP35968 1356 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 GRIN2AQ12879 1464 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 A0A0G2JND7 137 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 USP17L3A6NCW0 530 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 USP17L4A6NCW7 530 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 PGRMC1O00264 195 aaKnown RBP9.45□□□□□ -0.9
RTN3-202ENST00000339997 GIPC1O14908 333 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 CA4P22748 312 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 MAGOHP61326 146 aaKnown RBP9.45□□□□□ -0.9
RTN3-202ENST00000339997 USP17L1Q7RTZ2 530 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 RAB3IPQ96QF0 476 aaPredicted RBP9.45□□□□□ -0.9
RTN3-202ENST00000339997 NUCKS1Q9H1E3 243 aaKnown RBP9.45□□□□□ -0.9
RTN3-202ENST00000339997 IFT122Q9HBG6 1241 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 COPRSQ9NQ92 184 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 RAB20Q9NX57 234 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 TRIM10Q9UDY6 481 aa9.45□□□□□ -0.9
RTN3-202ENST00000339997 MAST1Q9Y2H9 1570 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 H7C0C1 242 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 NOP56O00567 594 aaKnown RBP9.44□□□□□ -0.9
RTN3-202ENST00000339997 RASGRF2O14827 1237 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 N4BP1O75113 896 aaKnown RBP9.44□□□□□ -0.9
RTN3-202ENST00000339997 PDE8BO95263 885 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 MMP1P03956 469 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 ATP5OP48047 213 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 PDE1BQ01064 536 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 GABPAQ06546 454 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 TRAF1Q13077 416 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 POLA2Q14181 598 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 MAP7Q14244 749 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 UBE2SQ16763 222 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 SGO2Q562F6 1265 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 PDZD8Q8NEN9 1154 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 SCYL1Q96KG9 808 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 DCTN4Q9UJW0 460 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 GGA1Q9UJY5 639 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 ASAP1Q9ULH1 1129 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 ZFYVE9O95405 1425 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 SSH2Q76I76 1423 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 GOLGA8IPA6NC78 632 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 GOLGA8JA6NMD2 632 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 PPP6R2O75170 966 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 PALMO75781 387 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 PTPN12Q05209 780 aaKnown RBP9.44□□□□□ -0.9
RTN3-202ENST00000339997 CHRNDQ07001 517 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 RNF169Q8NCN4 708 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 GLG1Q92896 1179 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 143 ms