RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 AFF4Q9UHB7 1163 aaKnown RBP8.52□□□□□ -1.05
SCN9A-201ENST00000303354 DYNC1I1O14576 645 aa8.52□□□□□ -1.05
SCN9A-201ENST00000303354 SOX5P35711 763 aa8.52□□□□□ -1.05
SCN9A-201ENST00000303354 DPF3Q92784 378 aa8.52□□□□□ -1.05
SCN9A-201ENST00000303354 MLH3Q9UHC1 1453 aa8.52□□□□□ -1.05
SCN9A-201ENST00000303354 TYW5A2RUC4 315 aaKnown RBP8.52□□□□□ -1.05
SCN9A-201ENST00000303354 NT5C3AQ9H0P0 336 aa8.52□□□□□ -1.05
SCN9A-201ENST00000303354 CCDC68Q9H2F9 335 aa8.52□□□□□ -1.05
SCN9A-201ENST00000303354 KDM3AQ9Y4C1 1321 aa8.52□□□□□ -1.05
SCN9A-201ENST00000303354 PPP4R1Q8TF05 950 aa8.52□□□□□ -1.05
SCN9A-201ENST00000303354 RNF139Q8WU17 664 aa8.52□□□□□ -1.05
SCN9A-201ENST00000303354 MIS12Q9H081 205 aa8.52□□□□□ -1.05
SCN9A-201ENST00000303354 STMN4Q9H169 189 aaPredicted RBP8.52□□□□□ -1.05
SCN9A-201ENST00000303354 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.52□□□□□ -1.052e-6■■■■□ 22.7
SCN9A-201ENST00000303354 N4BP1O75113 896 aaKnown RBP8.51□□□□□ -1.05
SCN9A-201ENST00000303354 ZSWIM5Q9P217 1185 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 AMFRQ9UKV5 643 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 ZNF215Q9UL58 517 aaPredicted RBP8.51□□□□□ -1.05
SCN9A-201ENST00000303354 NEMP1O14524 444 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 CXCR5P32302 372 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 STAT3P40763 770 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 PKP1Q13835 747 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 ARHGEF25Q86VW2 580 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 CCDC13Q8IYE1 715 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 ANKS4BQ8N8V4 417 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 LBHD1Q9BQE6 289 aaPredicted RBP8.51□□□□□ -1.05
SCN9A-201ENST00000303354 RPF1Q9H9Y2 349 aaKnown RBP8.51□□□□□ -1.05
SCN9A-201ENST00000303354 BICRAQ9NZM4 1560 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 ZMYM6O95789 1325 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 C2CD2LO14523 706 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 ENC1O14682 589 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 SETDB1Q15047 1291 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 N4BP2L2Q92802 583 aaPredicted RBP8.51□□□□□ -1.05
SCN9A-201ENST00000303354 CELF2O95319 508 aaKnown RBP8.51□□□□□ -1.05
SCN9A-201ENST00000303354 ALDH3A1P30838 453 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 SWSAP1Q6NVH7 229 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 CYP27A1Q02318 531 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 GLT8D2Q9H1C3 349 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 RRAGCQ9HB90 399 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 SFMBT1Q9UHJ3 866 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 NOC2LQ9Y3T9 749 aaKnown RBP8.51□□□□□ -1.05
SCN9A-201ENST00000303354 GFPT2O94808 682 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 CASP1P29466 404 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 SYCP2LQ5T4T6 812 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 DNAAF3Q8N9W5 541 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 OSBP2Q969R2 916 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 CALN1Q9BXU9 219 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 SARS2Q9NP81 518 aaKnown RBP8.51□□□□□ -1.05
SCN9A-201ENST00000303354 MYL1P05976 194 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 PDIA3P30101 505 aaKnown RBP8.51□□□□□ -1.05
SCN9A-201ENST00000303354 MKRN1Q9UHC7 482 aaKnown RBP8.51□□□□□ -1.05
SCN9A-201ENST00000303354 USP17L10C9JJH3 530 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 CIB2O75838 187 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 ATN1P54259 1190 aaPredicted RBP8.51□□□□□ -1.05
SCN9A-201ENST00000303354 RBBP5Q15291 538 aaKnown RBP8.51□□□□□ -1.05
SCN9A-201ENST00000303354 MICALL2Q8IY33 904 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 BHMTQ93088 406 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 CFAP57Q96MR6 1250 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 ZFYVE9O95405 1425 aa8.51□□□□□ -1.05
SCN9A-201ENST00000303354 TNPO2O14787 897 aaKnown RBP8.5□□□□□ -1.05
SCN9A-201ENST00000303354 PRPSAP1Q14558 356 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 NOSTRINQ8IVI9 506 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 WDR17Q8IZU2 1322 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 ZMYND10O75800 440 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 PTPREP23469 700 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 YWHAEP62258 255 aaKnown RBP8.5□□□□□ -1.05
SCN9A-201ENST00000303354 NME3Q13232 169 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 XPO4Q9C0E2 1151 aaKnown RBP8.5□□□□□ -1.05
SCN9A-201ENST00000303354 SAMSN1Q9NSI8 373 aaKnown RBP8.5□□□□□ -1.05
SCN9A-201ENST00000303354 PCDHA4Q9UN74 947 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 ARMCX3Q9UH62 379 aaPredicted RBP8.5□□□□□ -1.05
SCN9A-201ENST00000303354 PCDHA6Q9UN73 950 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 PCDHA8Q9Y5H6 950 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 USP17L15C9J2P7 530 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 USP17L13C9JLJ4 530 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 USP17L11C9JVI0 530 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 USP17L18D6R9N7 530 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 USP17L22D6RA61 530 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 USP17L17D6RBQ6 530 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 USP17L19D6RCP7 530 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 USP17L20D6RJB6 530 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 RNF8O76064 485 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 ADD2P35612 726 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 USP17L24Q0WX57 530 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 USP17L6PQ6QN14 398 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 DDX53Q86TM3 631 aaKnown RBP8.5□□□□□ -1.05
SCN9A-201ENST00000303354 DACT3Q96B18 629 aaPredicted RBP8.5□□□□□ -1.05
SCN9A-201ENST00000303354 MMTAG2Q9BU76 263 aaKnown RBP8.5□□□□□ -1.05
SCN9A-201ENST00000303354 IFIH1Q9BYX4 1025 aaKnown RBP8.5□□□□□ -1.05
SCN9A-201ENST00000303354 WDR91A4D1P6 747 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 YWHAGP61981 247 aaKnown RBP eCLIP8.5□□□□□ -1.05
SCN9A-201ENST00000303354 RBM6P78332 1123 aaKnown RBP8.5□□□□□ -1.05
SCN9A-201ENST00000303354 ZBTB41Q5SVQ8 909 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 FYB2Q5VWT5 728 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 SAMD7Q7Z3H4 446 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 KRIT1O00522 736 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 HMGCS2P54868 508 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 GBP6Q6ZN66 633 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 MED23Q9ULK4 1368 aa8.5□□□□□ -1.05
SCN9A-201ENST00000303354 CPB1P15086 417 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms