RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 COL2A1P02458 1487 aaPredicted RBP18.03■□□□□ 0.48
UBE3D-201ENST00000237186 CDK17Q00537 523 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 ECM1Q16610 540 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 KCNK18Q7Z418 384 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 DDX12PQ92771 950 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 DNAJC19Q96DA6 116 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 CDC23Q9UJX2 597 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 KDM3AQ9Y4C1 1321 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 F5H6K3 240 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 MTIF2P46199 727 aaKnown RBP18.03■□□□□ 0.48
UBE3D-201ENST00000237186 MMP14P50281 582 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 RBM5P52756 815 aaKnown RBP eCLIP18.03■□□□□ 0.48
UBE3D-201ENST00000237186 TUBB4BP68371 445 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 ZBED6P86452 979 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 ICA1Q05084 483 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 KLRC3Q07444 240 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 CDC37Q16543 378 aaPredicted RBP18.03■□□□□ 0.48
UBE3D-201ENST00000237186 ZNF569Q5MCW4 686 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 DEFB132Q7Z7B7 95 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 HPS3Q969F9 1004 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 NOC4LQ9BVI4 516 aaKnown RBP18.03■□□□□ 0.48
UBE3D-201ENST00000237186 TRIM34Q9BYJ4 488 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 ARGLU1Q9NWB6 273 aaPredicted RBP18.03■□□□□ 0.48
UBE3D-201ENST00000237186 ZNF446Q9NWS9 450 aa18.03■□□□□ 0.48
UBE3D-201ENST00000237186 REXO2Q9Y3B8 237 aaKnown RBP18.03■□□□□ 0.48
UBE3D-201ENST00000237186 USP17L15C9J2P7 530 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 USP17L13C9JLJ4 530 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 USP17L11C9JVI0 530 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 USP17L18D6R9N7 530 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 USP17L22D6RA61 530 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 USP17L17D6RBQ6 530 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 USP17L19D6RCP7 530 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 USP17L20D6RJB6 530 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 MEIS2O14770 477 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 CLCN6P51797 869 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 USP17L24Q0WX57 530 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 USP17L6PQ6QN14 398 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 TEX2Q8IWB9 1127 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 RABGGTAQ92696 567 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 SLF1Q9BQI6 1058 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 ANO3Q9BYT9 981 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 ADAMTSL1Q8N6G6 1762 aa18.02■□□□□ 0.48
UBE3D-201ENST00000237186 CTAGE9A4FU28 777 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 FAM196BA6NMK8 535 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 PES1O00541 588 aaKnown RBP18.01■□□□□ 0.47
UBE3D-201ENST00000237186 ABCB5Q2M3G0 1257 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 SHROOM1Q2M3G4 852 aaPredicted RBP18.01■□□□□ 0.47
UBE3D-201ENST00000237186 FKBP15Q5T1M5 1219 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 BTNL9Q6UXG8 535 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 DYMQ7RTS9 669 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 SLFN12Q8IYM2 578 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 CCDC170Q8IYT3 715 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 AMNQ9BXJ7 453 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 HAUS4Q9H6D7 363 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 SIPA1L1O43166 1804 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 MYH8P13535 1937 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 TBX3O15119 743 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 MARCH6O60337 910 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 TRIM21P19474 475 aaKnown RBP18.01■□□□□ 0.47
UBE3D-201ENST00000237186 HNRNPH3P31942 346 aaKnown RBP18.01■□□□□ 0.47
UBE3D-201ENST00000237186 VWA3BQ502W6 1294 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 SRGAP1Q7Z6B7 1085 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 CEP112Q8N8E3 955 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 SUPT20HQ8NEM7 779 aa18.01■□□□□ 0.47
UBE3D-201ENST00000237186 BMP2KQ9NSY1 1161 aaPredicted RBP18.01■□□□□ 0.47
UBE3D-201ENST00000237186 ZRANB2O95218 330 aaKnown RBP eCLIP18■□□□□ 0.47
UBE3D-201ENST00000237186 FOSP01100 380 aaPredicted RBP18■□□□□ 0.47
UBE3D-201ENST00000237186 CHRNA5P30532 468 aa18■□□□□ 0.47
UBE3D-201ENST00000237186 KRT83P78385 493 aa18■□□□□ 0.47
UBE3D-201ENST00000237186 BMS1Q14692 1282 aaKnown RBP18■□□□□ 0.47
UBE3D-201ENST00000237186 SLC35F6Q8N357 371 aa18■□□□□ 0.47
UBE3D-201ENST00000237186 AGPAT5Q9NUQ2 364 aa18■□□□□ 0.47
UBE3D-201ENST00000237186 ATP8B1O43520 1251 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 NDUFB10O96000 172 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 MAN2A1Q16706 1144 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 AOC3Q16853 763 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 Q4G0T1 1027 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 ZCWPW2Q504Y3 356 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 LRRC55Q6ZSA7 311 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 GOLGA1Q92805 767 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 EEF2KMTQ96G04 330 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 NAPGQ99747 312 aaPredicted RBP17.99■□□□□ 0.47
UBE3D-201ENST00000237186 PDGFDQ9GZP0 370 aaPredicted RBP17.99■□□□□ 0.47
UBE3D-201ENST00000237186 NDST4Q9H3R1 872 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 ZNHIT6Q9NWK9 470 aaKnown RBP17.99■□□□□ 0.47
UBE3D-201ENST00000237186 EIF3CLB5ME19 914 aaKnown RBP17.99■□□□□ 0.47
UBE3D-201ENST00000237186 ABL1P00519 1130 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 IDEP14735 1019 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 KIF4BQ2VIQ3 1234 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 SYDE2Q5VT97 1194 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 CCDC84Q86UT8 332 aaPredicted RBP17.99■□□□□ 0.47
UBE3D-201ENST00000237186 MYOCDQ8IZQ8 938 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 KRT222Q8N1A0 295 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 PRMT6Q96LA8 375 aaPredicted RBP17.99■□□□□ 0.47
UBE3D-201ENST00000237186 EIF3CQ99613 913 aaKnown RBP17.99■□□□□ 0.47
UBE3D-201ENST00000237186 TDRD3Q9H7E2 651 aaKnown RBP17.99■□□□□ 0.47
UBE3D-201ENST00000237186 SIK3Q9Y2K2 1263 aa17.99■□□□□ 0.47
UBE3D-201ENST00000237186 NKRFO15226 690 aaKnown RBP eCLIP17.98■□□□□ 0.47
UBE3D-201ENST00000237186 BMP3P12645 472 aa17.98■□□□□ 0.47
UBE3D-201ENST00000237186 CIITAP33076 1130 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms