RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	APE1	P14904	514 aa		4.8	□□□□□ -1.64
CAF16	YFL028C	URE2	P23202	354 aa	Known RBP	4.8	□□□□□ -1.64
CAF16	YFL028C	CLB2	P24869	491 aa		4.8	□□□□□ -1.64
CAF16	YFL028C	ECM32	P32644	1121 aa	Known RBP	4.8	□□□□□ -1.64
CAF16	YFL028C	SEC66	P33754	206 aa		4.8	□□□□□ -1.64
CAF16	YFL028C	OSH3	P38713	996 aa	Known RBP	4.8	□□□□□ -1.64
CAF16	YFL028C	RIX1	P38883	763 aa	Predicted RBP	4.8	□□□□□ -1.64
CAF16	YFL028C	CIN4	P39110	191 aa		4.8	□□□□□ -1.64
CAF16	YFL028C	IRC7	P43623	340 aa		4.8	□□□□□ -1.64
CAF16	YFL028C	DLD2	P46681	530 aa	Known RBP	4.8	□□□□□ -1.64
CAF16	YFL028C	ASI1	P54074	624 aa		4.8	□□□□□ -1.64
CAF16	YFL028C	CIK1	Q01649	594 aa		4.8	□□□□□ -1.64
CAF16	YFL028C	MSC1	Q03104	513 aa		4.8	□□□□□ -1.64
CAF16	YFL028C	ROY1	Q04847	553 aa		4.8	□□□□□ -1.64
CAF16	YFL028C	PIG1	Q06216	648 aa		4.8	□□□□□ -1.64
CAF16	YFL028C	YDL007C-A	Q2V2Q0	85 aa		4.8	□□□□□ -1.64
CAF16	YFL028C	HSP82	P02829	709 aa	Known RBP	4.79	□□□□□ -1.64
CAF16	YFL028C	ERG11	P10614	530 aa		4.79	□□□□□ -1.64
CAF16	YFL028C	BUD5	P25300	642 aa	Predicted RBP	4.79	□□□□□ -1.64
CAF16	YFL028C	BUD14	P27637	709 aa		4.79	□□□□□ -1.64
CAF16	YFL028C	HXT3	P32466	567 aa	Known RBP	4.79	□□□□□ -1.64
CAF16	YFL028C	MIA40	P36046	403 aa		4.79	□□□□□ -1.64
CAF16	YFL028C	GYL1	Q04322	720 aa		4.79	□□□□□ -1.64
CAF16	YFL028C	RBS1	Q05672	457 aa	Known RBP	4.79	□□□□□ -1.64
CAF16	YFL028C	ADE13	Q05911	482 aa	Known RBP	4.79	□□□□□ -1.64
CAF16	YFL028C	YDL057W	Q07379	328 aa		4.79	□□□□□ -1.64
CAF16	YFL028C	ETT1	Q08421	412 aa	Known RBP	4.79	□□□□□ -1.64
CAF16	YFL028C	ISN1	Q99312	450 aa		4.79	□□□□□ -1.64
CAF16	YFL028C	PPH22	P23595	377 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	ELO2	P25358	347 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	GAC1	P28006	793 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	TFB1	P32776	642 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	FLO10	P36170	1169 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	APE4	P38821	490 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	JEM1	P40358	645 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	YIL089W	P40500	205 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	LYS20	P48570	428 aa	Known RBP	4.78	□□□□□ -1.64
CAF16	YFL028C	UBP8	P50102	471 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	YGR126W	P53274	230 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	VTA1	Q06263	330 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	ATG26	Q06321	1198 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	FMP45	Q07651	309 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	OSW1	Q08692	278 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	FRE7	Q12333	620 aa		4.78	□□□□□ -1.64
CAF16	YFL028C	PUT2	P07275	575 aa		4.77	□□□□□ -1.65
CAF16	YFL028C	TUB1	P09733	447 aa	Known RBP	4.77	□□□□□ -1.65
CAF16	YFL028C	COQ1	P18900	473 aa		4.77	□□□□□ -1.65
CAF16	YFL028C	MNE1	P24720	663 aa		4.77	□□□□□ -1.65
CAF16	YFL028C	COQ3	P27680	312 aa		4.77	□□□□□ -1.65
CAF16	YFL028C	ERV1	P27882	189 aa		4.77	□□□□□ -1.65
CAF16	YFL028C	URA7	P28274	579 aa	Known RBP	4.77	□□□□□ -1.65
CAF16	YFL028C	MTR2	P34232	184 aa	Known RBP	4.77	□□□□□ -1.65
CAF16	YFL028C	KEL1	P38853	1164 aa	Known RBP	4.77	□□□□□ -1.65
CAF16	YFL028C	YIL060W	P40519	144 aa		4.77	□□□□□ -1.65
CAF16	YFL028C	LCB2	P40970	561 aa		4.77	□□□□□ -1.65
CAF16	YFL028C	DUG3	P53871	357 aa		4.77	□□□□□ -1.65
CAF16	YFL028C	TOF2	Q02208	771 aa		4.77	□□□□□ -1.65
CAF16	YFL028C	YVH1	Q02256	364 aa	Known RBP	4.77	□□□□□ -1.65
CAF16	YFL028C	SWF1	Q04629	336 aa		4.77	□□□□□ -1.65
CAF16	YFL028C	ORM2	Q06144	216 aa		4.77	□□□□□ -1.65
CAF16	YFL028C	CSR2	Q12734	1121 aa		4.77	□□□□□ -1.65
CAF16	YFL028C	RPL31B	P0C2H9	113 aa	Known RBP	4.76	□□□□□ -1.65
CAF16	YFL028C	HOM2	P13663	365 aa	Known RBP	4.76	□□□□□ -1.65
CAF16	YFL028C	MDH1	P17505	334 aa	Known RBP RIP-Chip data	4.76	□□□□□ -1.65	not detected
CAF16	YFL028C	HCS1	P34243	683 aa		4.76	□□□□□ -1.65
CAF16	YFL028C	ARP1	P38696	384 aa		4.76	□□□□□ -1.65
CAF16	YFL028C	VPS41	P38959	992 aa		4.76	□□□□□ -1.65
CAF16	YFL028C	AIM22	P47051	409 aa		4.76	□□□□□ -1.65
CAF16	YFL028C	EAF7	P53911	425 aa	Known RBP	4.76	□□□□□ -1.65
CAF16	YFL028C	KAP120	Q02932	1032 aa		4.76	□□□□□ -1.65
CAF16	YFL028C	KEL3	Q08979	651 aa	Predicted RBP	4.76	□□□□□ -1.65
CAF16	YFL028C	RRI1	Q12468	440 aa		4.76	□□□□□ -1.65
CAF16	YFL028C	PAR32	Q12515	295 aa	Known RBP	4.76	□□□□□ -1.65
CAF16	YFL028C	GAL4	P04386	881 aa		4.75	□□□□□ -1.65
CAF16	YFL028C	YMR085W	P0CF18	432 aa		4.75	□□□□□ -1.65
CAF16	YFL028C	RPB8	P20436	146 aa		4.75	□□□□□ -1.65
CAF16	YFL028C	ILV6	P25605	309 aa	Known RBP	4.75	□□□□□ -1.65
CAF16	YFL028C	TUL1	P36096	758 aa		4.75	□□□□□ -1.65
CAF16	YFL028C	ROT2	P38138	954 aa		4.75	□□□□□ -1.65
CAF16	YFL028C	VRG4	P40107	337 aa		4.75	□□□□□ -1.65
CAF16	YFL028C	SNG1	P46950	547 aa		4.75	□□□□□ -1.65
CAF16	YFL028C	YNL144C	P53907	740 aa		4.75	□□□□□ -1.65
CAF16	YFL028C	PDH1	Q12428	516 aa	Known RBP	4.75	□□□□□ -1.65
CAF16	YFL028C	COR1	P07256	457 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	NAT1	P12945	854 aa	Known RBP	4.74	□□□□□ -1.65
CAF16	YFL028C	CLC1	P17891	233 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	DPH2	P32461	534 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	VPH1	P32563	840 aa	Known RBP	4.74	□□□□□ -1.65
CAF16	YFL028C	MDL1	P33310	695 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	YBL028C	P38202	106 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	UBA4	P38820	440 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	NET1	P47035	1189 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	YJL055W	P47044	245 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	TCB2	P48231	1178 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	PYK2	P52489	506 aa	Known RBP	4.74	□□□□□ -1.65
CAF16	YFL028C	VPS9	P54787	451 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	OAZ1	Q02803	292 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	YMR160W	Q03823	816 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	MCP2	Q06567	569 aa		4.74	□□□□□ -1.65
CAF16	YFL028C	YDL218W	Q07629	317 aa		4.74	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 8.5 ms