RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 A6NJR5 290 aa19.4■□□□□ 0.7
CLN3-264ENST00000637985 SELPP16109 830 aa19.4■□□□□ 0.7
CLN3-264ENST00000637985 TCTN1Q2MV58 587 aa19.4■□□□□ 0.7
CLN3-264ENST00000637985 CCDC155Q8N6L0 562 aa19.4■□□□□ 0.7
CLN3-264ENST00000637985 FBXO22Q8NEZ5 403 aa19.4■□□□□ 0.7
CLN3-264ENST00000637985 C17orf80Q9BSJ5 609 aa19.4■□□□□ 0.7
CLN3-264ENST00000637985 CTNNA3Q9UI47 895 aa19.4■□□□□ 0.7
CLN3-264ENST00000637985 LOC102724159A0A0B4J2E5 919 aa19.39■□□□□ 0.69
CLN3-264ENST00000637985 NBNO60934 754 aa19.39■□□□□ 0.69
CLN3-264ENST00000637985 PARNO95453 639 aaKnown RBP19.39■□□□□ 0.69
CLN3-264ENST00000637985 IRS1P35568 1242 aa19.39■□□□□ 0.69
CLN3-264ENST00000637985 PWP2Q15269 919 aaKnown RBP19.39■□□□□ 0.69
CLN3-264ENST00000637985 PTGISQ16647 500 aa19.39■□□□□ 0.69
CLN3-264ENST00000637985 NSMFQ6X4W1 530 aa19.39■□□□□ 0.69
CLN3-264ENST00000637985 PABPC5Q96DU9 382 aaKnown RBP19.39■□□□□ 0.69
CLN3-264ENST00000637985 BOLA2Q9H3K6 86 aa19.39■□□□□ 0.69
CLN3-264ENST00000637985 MYH7P12883 1935 aa19.39■□□□□ 0.69
CLN3-264ENST00000637985 GSG1L2A8MUP6 293 aa19.38■□□□□ 0.69
CLN3-264ENST00000637985 MINDY4BA8MYZ0 360 aa19.38■□□□□ 0.69
CLN3-264ENST00000637985 PLA2G6O60733 806 aa19.38■□□□□ 0.69
CLN3-264ENST00000637985 ALDH5A1P51649 535 aaPredicted RBP19.38■□□□□ 0.69
CLN3-264ENST00000637985 PTPN5P54829 565 aa19.38■□□□□ 0.69
CLN3-264ENST00000637985 FOXK2Q01167 660 aa19.38■□□□□ 0.69
CLN3-264ENST00000637985 RBL2Q08999 1139 aa19.38■□□□□ 0.69
CLN3-264ENST00000637985 PTPROQ16827 1216 aa19.38■□□□□ 0.69
CLN3-264ENST00000637985 HERC4Q5GLZ8 1057 aaPredicted RBP19.38■□□□□ 0.69
CLN3-264ENST00000637985 GIMAP6Q6P9H5 292 aa19.38■□□□□ 0.69
CLN3-264ENST00000637985 LRRC8DQ7L1W4 858 aa19.38■□□□□ 0.69
CLN3-264ENST00000637985 ZNF444Q8N0Y2 327 aaPredicted RBP19.38■□□□□ 0.69
CLN3-264ENST00000637985 BANK1Q8NDB2 785 aa19.38■□□□□ 0.69
CLN3-264ENST00000637985 RAD50Q92878 1312 aa19.38■□□□□ 0.69
CLN3-264ENST00000637985 GMCL1Q96IK5 515 aa19.38■□□□□ 0.69
CLN3-264ENST00000637985 STRBPQ96SI9 672 aaKnown RBP19.38■□□□□ 0.69
CLN3-264ENST00000637985 ADD3Q9UEY8 706 aaKnown RBP19.38■□□□□ 0.69
CLN3-264ENST00000637985 NKRFO15226 690 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLN3-264ENST00000637985 EFCAB14O75071 495 aa19.37■□□□□ 0.69
CLN3-264ENST00000637985 SNAP25P60880 206 aa19.37■□□□□ 0.69
CLN3-264ENST00000637985 TIGD5Q53EQ6 642 aa19.37■□□□□ 0.69
CLN3-264ENST00000637985 IER5LQ5T953 404 aa19.37■□□□□ 0.69
CLN3-264ENST00000637985 DHX38Q92620 1227 aaKnown RBP19.37■□□□□ 0.69
CLN3-264ENST00000637985 CRBNQ96SW2 442 aa19.37■□□□□ 0.69
CLN3-264ENST00000637985 HAUS7Q99871 368 aa19.37■□□□□ 0.69
CLN3-264ENST00000637985 INSL6Q9Y581 213 aa19.37■□□□□ 0.69
CLN3-264ENST00000637985 CACNA1AO00555 2505 aa19.36■□□□□ 0.69
CLN3-264ENST00000637985 PRDM1O75626 825 aa19.36■□□□□ 0.69
CLN3-264ENST00000637985 ATP5JP18859 108 aa19.36■□□□□ 0.69
CLN3-264ENST00000637985 SLC1A4P43007 532 aa19.36■□□□□ 0.69
CLN3-264ENST00000637985 IKQ13123 557 aaPredicted RBP19.36■□□□□ 0.69
CLN3-264ENST00000637985 BAATQ14032 418 aaPredicted RBP19.36■□□□□ 0.69
CLN3-264ENST00000637985 IKBKEQ14164 716 aa19.36■□□□□ 0.69
CLN3-264ENST00000637985 FAM117BQ6P1L5 589 aa19.36■□□□□ 0.69
CLN3-264ENST00000637985 BMP8AQ7Z5Y6 402 aa19.36■□□□□ 0.69
CLN3-264ENST00000637985 SESTD1Q86VW0 696 aa19.36■□□□□ 0.69
CLN3-264ENST00000637985 LRRCC1Q9C099 1032 aa19.36■□□□□ 0.69
CLN3-264ENST00000637985 MUTYHQ9UIF7 546 aa19.36■□□□□ 0.69
CLN3-264ENST00000637985 ISY1Q9ULR0 285 aaKnown RBP19.36■□□□□ 0.69
CLN3-264ENST00000637985 PLIN4Q96Q06 1357 aa19.35■□□□□ 0.69
CLN3-264ENST00000637985 ZFHX2Q9C0A1 2572 aaPredicted RBP19.35■□□□□ 0.69
CLN3-264ENST00000637985 PPP2R5BQ15173 497 aa19.35■□□□□ 0.69
CLN3-264ENST00000637985 TCEAL5Q5H9L2 206 aa19.35■□□□□ 0.69
CLN3-264ENST00000637985 GDF6Q6KF10 455 aaPredicted RBP19.35■□□□□ 0.69
CLN3-264ENST00000637985 NEDD1Q8NHV4 660 aa19.35■□□□□ 0.69
CLN3-264ENST00000637985 SP7Q8TDD2 431 aaPredicted RBP19.35■□□□□ 0.69
CLN3-264ENST00000637985 COPS5Q92905 334 aa19.35■□□□□ 0.69
CLN3-264ENST00000637985 PRRX2Q99811 253 aa19.35■□□□□ 0.69
CLN3-264ENST00000637985 ZNF287Q9HBT7 754 aa19.35■□□□□ 0.69
CLN3-264ENST00000637985 CCPG1Q9ULG6 757 aa19.35■□□□□ 0.69
CLN3-264ENST00000637985 PRR12Q9ULL5 1215 aa19.35■□□□□ 0.69
CLN3-264ENST00000637985 SPTBN4Q9H254 2564 aa19.35■□□□□ 0.69
CLN3-264ENST00000637985 CKBP12277 381 aa19.34■□□□□ 0.69
CLN3-264ENST00000637985 MCCP23508 829 aa19.34■□□□□ 0.69
CLN3-264ENST00000637985 LTBRP36941 435 aa19.34■□□□□ 0.69
CLN3-264ENST00000637985 HTRA4P83105 476 aaPredicted RBP19.34■□□□□ 0.69
CLN3-264ENST00000637985 TCF15Q12870 199 aa19.34■□□□□ 0.69
CLN3-264ENST00000637985 SMAD2Q15796 467 aaKnown RBP19.34■□□□□ 0.69
CLN3-264ENST00000637985 EPC2Q52LR7 807 aa19.34■□□□□ 0.69
CLN3-264ENST00000637985 ZSCAN25Q6NSZ9 544 aa19.34■□□□□ 0.69
CLN3-264ENST00000637985 EDAQ92838 391 aa19.34■□□□□ 0.69
CLN3-264ENST00000637985 MYO7AQ13402 2215 aa19.34■□□□□ 0.69
CLN3-264ENST00000637985 H3BNC9 293 aa19.33■□□□□ 0.68
CLN3-264ENST00000637985 ICAM1P05362 532 aa19.33■□□□□ 0.68
CLN3-264ENST00000637985 CHMP4BP1P59074 171 aa19.33■□□□□ 0.68
CLN3-264ENST00000637985 RCSD1Q6JBY9 416 aa19.33■□□□□ 0.68
CLN3-264ENST00000637985 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.33■□□□□ 0.68
CLN3-264ENST00000637985 EP400NLQ6ZTU2 488 aa19.33■□□□□ 0.68
CLN3-264ENST00000637985 RNF135Q8IUD6 432 aa19.33■□□□□ 0.68
CLN3-264ENST00000637985 SCFD2Q8WU76 684 aa19.33■□□□□ 0.68
CLN3-264ENST00000637985 SAMD11Q96NU1 681 aa19.33■□□□□ 0.68
CLN3-264ENST00000637985 BCL11AQ9H165 835 aa19.33■□□□□ 0.68
CLN3-264ENST00000637985 CACNA1HO95180 2353 aa19.33■□□□□ 0.68
CLN3-264ENST00000637985 MKRN4PQ13434 485 aaPredicted RBP19.32■□□□□ 0.68
CLN3-264ENST00000637985 PKN1Q16512 942 aa19.32■□□□□ 0.68
CLN3-264ENST00000637985 TRAF7Q6Q0C0 670 aa19.32■□□□□ 0.68
CLN3-264ENST00000637985 KCTD1Q719H9 257 aa19.32■□□□□ 0.68
CLN3-264ENST00000637985 CHMP4CQ96CF2 233 aa19.32■□□□□ 0.68
CLN3-264ENST00000637985 POP1Q99575 1024 aaKnown RBP19.32■□□□□ 0.68
CLN3-264ENST00000637985 NSUN3Q9H649 340 aaKnown RBP19.32■□□□□ 0.68
CLN3-264ENST00000637985 CLDND1Q9NY35 253 aa19.32■□□□□ 0.68
CLN3-264ENST00000637985 MICAL3Q7RTP6 2002 aa19.32■□□□□ 0.68
CLN3-264ENST00000637985 RBAK-RBAKDNI3L0D1 243 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms