RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 TMC6Q7Z403 805 aa20.69■□□□□ 0.9
CLN3-263ENST00000637871 RASGRP4Q8TDF6 673 aa20.69■□□□□ 0.9
CLN3-263ENST00000637871 CCDC47Q96A33 483 aaKnown RBP20.69■□□□□ 0.9
CLN3-263ENST00000637871 RAB34Q9BZG1 259 aa20.69■□□□□ 0.9
CLN3-263ENST00000637871 VAT1LQ9HCJ6 419 aa20.69■□□□□ 0.9
CLN3-263ENST00000637871 RIC8AQ9NPQ8 531 aa20.69■□□□□ 0.9
CLN3-263ENST00000637871 ZHX2Q9Y6X8 837 aa20.69■□□□□ 0.9
CLN3-263ENST00000637871 SPDYE5A6NIY4 337 aa20.68■□□□□ 0.9
CLN3-263ENST00000637871 ASNSP08243 561 aa20.68■□□□□ 0.9
CLN3-263ENST00000637871 LRMPQ12912 555 aa20.68■□□□□ 0.9
CLN3-263ENST00000637871 VSTM4Q8IW00 320 aa20.68■□□□□ 0.9
CLN3-263ENST00000637871 LRRC47Q8N1G4 583 aaKnown RBP20.68■□□□□ 0.9
CLN3-263ENST00000637871 WNK4Q96J92 1243 aa20.68■□□□□ 0.9
CLN3-263ENST00000637871 UBA5Q9GZZ9 404 aa20.68■□□□□ 0.9
CLN3-263ENST00000637871 RASSF10A6NK89 507 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 ZBTB5O15062 677 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 AMPD3Q01432 767 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 ATP2B2Q01814 1243 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 TRAF1Q13077 416 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 ZNF658Q5TYW1 1059 aaPredicted RBP20.67■□□□□ 0.9
CLN3-263ENST00000637871 ACER1Q8TDN7 264 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 JMJD4Q9H9V9 463 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 PCNTO95613 3336 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 PTPRFP10586 1907 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 FAM155AB1AL88 458 aaPredicted RBP20.67■□□□□ 0.9
CLN3-263ENST00000637871 IRF6O14896 467 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 SLC26A4O43511 780 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 GCFC2P16383 781 aaKnown RBP20.67■□□□□ 0.9
CLN3-263ENST00000637871 ECE1P42892 770 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 ICA1Q05084 483 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 SPAG1Q07617 926 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 CUL4BQ13620 913 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 DEFB115Q30KQ5 88 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 ERO1BQ86YB8 467 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 GRAMD1CQ8IYS0 662 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 ADGRF4Q8IZF3 695 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 CUL5Q93034 780 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 ZIC5Q96T25 663 aa20.67■□□□□ 0.9
CLN3-263ENST00000637871 ADAMTS3O15072 1205 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 CCNT1O60563 726 aaKnown RBP20.66■□□□□ 0.9
CLN3-263ENST00000637871 SLC10A3P09131 477 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 ATP1A3P13637 1013 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 CCZ1BP86790 482 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 CCZ1P86791 482 aaPredicted RBP20.66■□□□□ 0.9
CLN3-263ENST00000637871 PDIA5Q14554 519 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 ZYXQ15942 572 aaKnown RBP20.66■□□□□ 0.9
CLN3-263ENST00000637871 CCDC96Q2M329 555 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 LETM2Q2VYF4 491 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 FILIP1LQ4L180 1135 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 SPRYD7Q5W111 196 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 PPP4R3AQ6IN85 833 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 SIAH1Q8IUQ4 282 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 GMCL1P1Q8NEA9 526 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 TBCKQ8TEA7 893 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 TMEM60Q9H2L4 133 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 GPCPD1Q9NPB8 672 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 MYH4Q9Y623 1939 aa20.66■□□□□ 0.9
CLN3-263ENST00000637871 FRMPD2Q68DX3 1309 aaPredicted RBP20.66■□□□□ 0.9
CLN3-263ENST00000637871 A0A1W2PRG0 241 aa20.65■□□□□ 0.9
CLN3-263ENST00000637871 AOC2O75106 756 aa20.65■□□□□ 0.9
CLN3-263ENST00000637871 SPP2Q13103 211 aa20.65■□□□□ 0.9
CLN3-263ENST00000637871 TMEM266Q2M3C6 531 aa20.65■□□□□ 0.9
CLN3-263ENST00000637871 RASSF8Q8NHQ8 419 aa20.65■□□□□ 0.9
CLN3-263ENST00000637871 KBTBD4Q9NVX7 518 aa20.65■□□□□ 0.9
CLN3-263ENST00000637871 RWDD2AQ9UIY3 292 aa20.65■□□□□ 0.9
CLN3-263ENST00000637871 PPP1R3GB7ZBB8 358 aa20.64■□□□□ 0.9
CLN3-263ENST00000637871 DYNC1I1O14576 645 aa20.64■□□□□ 0.9
CLN3-263ENST00000637871 RPN1P04843 607 aaKnown RBP20.64■□□□□ 0.9
CLN3-263ENST00000637871 EEF2P13639 858 aaKnown RBP20.64■□□□□ 0.9
CLN3-263ENST00000637871 FXR2P51116 673 aaKnown RBP eCLIP20.64■□□□□ 0.9
CLN3-263ENST00000637871 STIM1Q13586 685 aa20.64■□□□□ 0.9
CLN3-263ENST00000637871 CABP7Q86V35 215 aa20.64■□□□□ 0.9
CLN3-263ENST00000637871 ANKRD20A12PQ8NF67 263 aa20.64■□□□□ 0.9
CLN3-263ENST00000637871 MYRIPQ8NFW9 859 aa20.64■□□□□ 0.9
CLN3-263ENST00000637871 GMCL1Q96IK5 515 aa20.64■□□□□ 0.9
CLN3-263ENST00000637871 CAPNS2Q96L46 248 aa20.64■□□□□ 0.9
CLN3-263ENST00000637871 LRRC27Q9C0I9 530 aa20.64■□□□□ 0.9
CLN3-263ENST00000637871 AFG3L2Q9Y4W6 797 aa20.64■□□□□ 0.9
CLN3-263ENST00000637871 PAXBP1Q9Y5B6 917 aa20.64■□□□□ 0.9
CLN3-263ENST00000637871 SYNRGQ9UMZ2 1314 aa20.64■□□□□ 0.89
CLN3-263ENST00000637871 UNCXA6NJT0 531 aa20.64■□□□□ 0.89
CLN3-263ENST00000637871 PPATQ06203 517 aa20.64■□□□□ 0.89
CLN3-263ENST00000637871 PPIL2Q13356 520 aa20.64■□□□□ 0.89
CLN3-263ENST00000637871 MTMR2Q13614 643 aa20.64■□□□□ 0.89
CLN3-263ENST00000637871 TPD52L1Q16890 204 aaPredicted RBP20.64■□□□□ 0.89
CLN3-263ENST00000637871 FCHSD1Q86WN1 690 aa20.64■□□□□ 0.89
CLN3-263ENST00000637871 CALML4Q96GE6 196 aa20.64■□□□□ 0.89
CLN3-263ENST00000637871 HHIPL1Q96JK4 782 aa20.64■□□□□ 0.89
CLN3-263ENST00000637871 CPVLQ9H3G5 476 aa20.64■□□□□ 0.89
CLN3-263ENST00000637871 BIN2Q9UBW5 565 aaPredicted RBP20.64■□□□□ 0.89
CLN3-263ENST00000637871 SLC1A4P43007 532 aa20.63■□□□□ 0.89
CLN3-263ENST00000637871 CLK2P49760 499 aaKnown RBP20.63■□□□□ 0.89
CLN3-263ENST00000637871 VEGFBP49765 207 aa20.63■□□□□ 0.89
CLN3-263ENST00000637871 SLFN13Q68D06 897 aa20.63■□□□□ 0.89
CLN3-263ENST00000637871 IGSF22Q8N9C0 903 aa20.63■□□□□ 0.89
CLN3-263ENST00000637871 ZNF280CQ8ND82 737 aa20.63■□□□□ 0.89
CLN3-263ENST00000637871 MTMR9Q96QG7 549 aa20.63■□□□□ 0.89
CLN3-263ENST00000637871 STK17AQ9UEE5 414 aa20.63■□□□□ 0.89
CLN3-263ENST00000637871 A0A1B0GTH6 734 aa20.62■□□□□ 0.89
CLN3-263ENST00000637871 GTF2F1P35269 517 aaKnown RBP eCLIP20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms