RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	FMR1NB	Q8N0W7	255 aa	Predicted RBP	13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	CHST13	Q8NET6	341 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	GTF3C2	Q8WUA4	911 aa	Predicted RBP	13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	MBOAT7	Q96N66	472 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	CSRNP2	Q9H175	543 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	TMEM60	Q9H2L4	133 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	HOMER2	Q9NSB8	354 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	BTBD7	Q9P203	1132 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	HPSE	Q9Y251	543 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	RIPK3	Q9Y572	518 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	VWA3A	A6NCI4	1184 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	TDP2	O95551	362 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	PFKFB1	P16118	471 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	COPB2	P35606	906 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	ZNF157	P51786	506 aa	Predicted RBP	13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	NDUFA8	P51970	172 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	GRIN1	Q05586	938 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	IL17A	Q16552	155 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	CALCRL	Q16602	461 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	ZSCAN23	Q3MJ62	389 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823		Q4G0T1	1027 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	POTEE	Q6S8J3	1075 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	BRI3BP	Q8WY22	251 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	MTMR9	Q96QG7	549 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	ACAD9	Q9H845	621 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	FBXO40	Q9UH90	709 aa		13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	DDX25	Q9UHL0	483 aa	Known RBP	13.34	□□□□□ -0.27
CLN6-223	ENST00000637823	TESPA1	A2RU30	521 aa	Predicted RBP	13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	BTBD19	C9JJ37	291 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	PDHX	O00330	501 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	KIN	O60870	393 aa	Known RBP	13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	ZNF202	O95125	648 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	SLC25A27	O95847	323 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	ZNF76	P36508	570 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	RPS6	P62753	249 aa	Known RBP	13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	MKRN3	Q13064	507 aa	Known RBP	13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	RGMB	Q6NW40	437 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	NSMF	Q6X4W1	530 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	SAPCD2	Q86UD0	394 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	POTED	Q86YR6	584 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	TIGD1	Q96MW7	591 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	SPATC1L	Q9H0A9	340 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	NUP62CL	Q9H1M0	184 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	CLSTN2	Q9H4D0	955 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	RBPJL	Q9UBG7	517 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	KCNH3	Q9ULD8	1083 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	RPTOR	Q8N122	1335 aa		13.33	□□□□□ -0.28
CLN6-223	ENST00000637823	TBX3	O15119	743 aa		13.32	□□□□□ -0.28
CLN6-223	ENST00000637823	CTAGE5	O15320	804 aa		13.32	□□□□□ -0.28
CLN6-223	ENST00000637823	SLC37A4	O43826	429 aa		13.32	□□□□□ -0.28
CLN6-223	ENST00000637823	CNMD	O75829	334 aa		13.32	□□□□□ -0.28
CLN6-223	ENST00000637823	TOMM70	O94826	608 aa		13.32	□□□□□ -0.28
CLN6-223	ENST00000637823	SYK	P43405	635 aa		13.32	□□□□□ -0.28
CLN6-223	ENST00000637823	BAAT	Q14032	418 aa	Predicted RBP	13.32	□□□□□ -0.28
CLN6-223	ENST00000637823	PDIA5	Q14554	519 aa		13.32	□□□□□ -0.28
CLN6-223	ENST00000637823	SPECC1	Q5M775	1068 aa		13.32	□□□□□ -0.28
CLN6-223	ENST00000637823	RASAL3	Q86YV0	1011 aa		13.32	□□□□□ -0.28
CLN6-223	ENST00000637823	AK8	Q96MA6	479 aa		13.32	□□□□□ -0.28
CLN6-223	ENST00000637823	PAGR1	Q9BTK6	254 aa		13.32	□□□□□ -0.28
CLN6-223	ENST00000637823	COL20A1	Q9P218	1284 aa		13.32	□□□□□ -0.28
CLN6-223	ENST00000637823	TLL2	Q9Y6L7	1015 aa		13.32	□□□□□ -0.28
CLN6-223	ENST00000637823	LCT	P09848	1927 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	KIAA1217	Q5T5P2	1943 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	MANSC4	A6NHS7	340 aa	Predicted RBP	13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	MARCH6	O60337	910 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	TXK	P42681	527 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	GCLC	P48506	637 aa	Predicted RBP	13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	FXR2	P51116	673 aa	Known RBP eCLIP	13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	ZNF445	P59923	1031 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	TMEM266	Q2M3C6	531 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	XRRA1	Q6P2D8	792 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	SLFN12	Q8IYM2	578 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	SYMPK	Q92797	1274 aa	Known RBP	13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	HAS1	Q92839	578 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	CCDC102A	Q96A19	550 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	EPSTI1	Q96J88	318 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	FAM20A	Q96MK3	541 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	TAAR1	Q96RJ0	339 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	PYM1	Q9BRP8	204 aa	Known RBP	13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	MOV10L1	Q9BXT6	1211 aa	Known RBP	13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	RAB34	Q9BZG1	259 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	TNMD	Q9H2S6	317 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	KCNMB3	Q9NPA1	279 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	CYP39A1	Q9NYL5	469 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	PFAS	O15067	1338 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	FRMPD4	Q14CM0	1322 aa		13.31	□□□□□ -0.28
CLN6-223	ENST00000637823	TMEM88B	A6NKF7	163 aa		13.3	□□□□□ -0.28
CLN6-223	ENST00000637823	FAM86B1	E9PN63	330 aa		13.3	□□□□□ -0.28
CLN6-223	ENST00000637823	FAM86B2	P0C5J1	330 aa		13.3	□□□□□ -0.28
CLN6-223	ENST00000637823	TXLNA	P40222	546 aa		13.3	□□□□□ -0.28
CLN6-223	ENST00000637823	TEC	P42680	631 aa		13.3	□□□□□ -0.28
CLN6-223	ENST00000637823	INHBE	P58166	350 aa		13.3	□□□□□ -0.28
CLN6-223	ENST00000637823	FSTL1	Q12841	308 aa		13.3	□□□□□ -0.28
CLN6-223	ENST00000637823	CAMK4	Q16566	473 aa		13.3	□□□□□ -0.28
CLN6-223	ENST00000637823	CEP55	Q53EZ4	464 aa		13.3	□□□□□ -0.28
CLN6-223	ENST00000637823	PRR16	Q569H4	304 aa		13.3	□□□□□ -0.28
CLN6-223	ENST00000637823	PCNX4	Q63HM2	1172 aa		13.3	□□□□□ -0.28
CLN6-223	ENST00000637823	KANK3	Q6NY19	840 aa		13.3	□□□□□ -0.28

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