RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PAG1Q9NWQ8 432 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 CTNNA3Q9UI47 895 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 NLRC5Q86WI3 1866 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 KMT2EQ8IZD2 1858 aa17.35■□□□□ 0.37
CLN3-249ENST00000636685 ABHD14A-ACY1A0A1B0GW23 586 aa17.34■□□□□ 0.37
CLN3-249ENST00000636685 MINDY4BA8MYZ0 360 aa17.34■□□□□ 0.37
CLN3-249ENST00000636685 STAT2P52630 851 aa17.34■□□□□ 0.37
CLN3-249ENST00000636685 IKQ13123 557 aaPredicted RBP17.34■□□□□ 0.37
CLN3-249ENST00000636685 BRDTQ58F21 947 aaPredicted RBP17.34■□□□□ 0.37
CLN3-249ENST00000636685 COPS5Q92905 334 aa17.34■□□□□ 0.37
CLN3-249ENST00000636685 BCL11AQ9H165 835 aa17.34■□□□□ 0.37
CLN3-249ENST00000636685 MTMR4Q9NYA4 1195 aa17.34■□□□□ 0.37
CLN3-249ENST00000636685 A6NJR5 290 aa17.33■□□□□ 0.36
CLN3-249ENST00000636685 KPNA6O60684 536 aa17.33■□□□□ 0.36
CLN3-249ENST00000636685 PRDM1O75626 825 aa17.33■□□□□ 0.36
CLN3-249ENST00000636685 ALDH5A1P51649 535 aaPredicted RBP17.33■□□□□ 0.36
CLN3-249ENST00000636685 COL19A1Q14993 1142 aa17.33■□□□□ 0.36
CLN3-249ENST00000636685 CLUL1Q15846 466 aa17.33■□□□□ 0.36
CLN3-249ENST00000636685 GDF6Q6KF10 455 aaPredicted RBP17.33■□□□□ 0.36
CLN3-249ENST00000636685 RNF135Q8IUD6 432 aa17.33■□□□□ 0.36
CLN3-249ENST00000636685 RHPN1Q8TCX5 695 aa17.33■□□□□ 0.36
CLN3-249ENST00000636685 CHURC1Q8WUH1 139 aa17.33■□□□□ 0.36
CLN3-249ENST00000636685 STAG1Q8WVM7 1258 aa17.33■□□□□ 0.36
CLN3-249ENST00000636685 EDAQ92838 391 aa17.33■□□□□ 0.36
CLN3-249ENST00000636685 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.33■□□□□ 0.363e-6■■■■■ 36.1
CLN3-249ENST00000636685 PUS7LQ9H0K6 701 aaKnown RBP17.33■□□□□ 0.36
CLN3-249ENST00000636685 BOLA2Q9H3K6 86 aa17.33■□□□□ 0.36
CLN3-249ENST00000636685 CLDND1Q9NY35 253 aa17.33■□□□□ 0.36
CLN3-249ENST00000636685 RAD50Q92878 1312 aa17.32■□□□□ 0.36
CLN3-249ENST00000636685 TTLL1O95922 423 aa17.32■□□□□ 0.36
CLN3-249ENST00000636685 LTBRP36941 435 aa17.32■□□□□ 0.36
CLN3-249ENST00000636685 BAATQ14032 418 aaPredicted RBP17.32■□□□□ 0.36
CLN3-249ENST00000636685 IKBKEQ14164 716 aa17.32■□□□□ 0.36
CLN3-249ENST00000636685 UBE3CQ15386 1083 aa17.32■□□□□ 0.36
CLN3-249ENST00000636685 EPC2Q52LR7 807 aa17.32■□□□□ 0.36
CLN3-249ENST00000636685 SBK1Q52WX2 424 aa17.32■□□□□ 0.36
CLN3-249ENST00000636685 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.32■□□□□ 0.36
CLN3-249ENST00000636685 BMP8AQ7Z5Y6 402 aa17.32■□□□□ 0.36
CLN3-249ENST00000636685 FAM160B2Q86V87 743 aa17.32■□□□□ 0.36
CLN3-249ENST00000636685 PBXIP1Q96AQ6 731 aa17.32■□□□□ 0.36
CLN3-249ENST00000636685 INSL6Q9Y581 213 aa17.32■□□□□ 0.36
CLN3-249ENST00000636685 TMEM221A6NGB7 291 aa17.31■□□□□ 0.36
CLN3-249ENST00000636685 M0R296 226 aa17.31■□□□□ 0.36
CLN3-249ENST00000636685 CKBP12277 381 aa17.31■□□□□ 0.36
CLN3-249ENST00000636685 GPM6BQ13491 265 aa17.31■□□□□ 0.36
CLN3-249ENST00000636685 PPP2R5BQ15173 497 aa17.31■□□□□ 0.36
CLN3-249ENST00000636685 SMAD2Q15796 467 aaKnown RBP17.31■□□□□ 0.36
CLN3-249ENST00000636685 CEP85Q6P2H3 762 aa17.31■□□□□ 0.36
CLN3-249ENST00000636685 RPAINQ86UA6 219 aa17.31■□□□□ 0.36
CLN3-249ENST00000636685 ZNF444Q8N0Y2 327 aaPredicted RBP17.31■□□□□ 0.36
CLN3-249ENST00000636685 NSUN3Q9H649 340 aaKnown RBP17.31■□□□□ 0.36
CLN3-249ENST00000636685 ADD3Q9UEY8 706 aaKnown RBP17.31■□□□□ 0.36
CLN3-249ENST00000636685 CCPG1Q9ULG6 757 aa17.31■□□□□ 0.36
CLN3-249ENST00000636685 SYNPO2Q9UMS6 1093 aa17.31■□□□□ 0.36
CLN3-249ENST00000636685 RIF1Q5UIP0 2472 aaKnown RBP17.31■□□□□ 0.36
CLN3-249ENST00000636685 MYO15AQ9UKN7 3530 aa17.31■□□□□ 0.36
CLN3-249ENST00000636685 EFCAB14O75071 495 aa17.3■□□□□ 0.36
CLN3-249ENST00000636685 IFIT2P09913 472 aaKnown RBP17.3■□□□□ 0.36
CLN3-249ENST00000636685 MCCP23508 829 aa17.3■□□□□ 0.36
CLN3-249ENST00000636685 KCTD1Q719H9 257 aa17.3■□□□□ 0.36
CLN3-249ENST00000636685 SP7Q8TDD2 431 aaPredicted RBP17.3■□□□□ 0.36
CLN3-249ENST00000636685 PRRX2Q99811 253 aa17.3■□□□□ 0.36
CLN3-249ENST00000636685 PLXNA3P51805 1871 aa17.3■□□□□ 0.36
CLN3-249ENST00000636685 GSG1L2A8MUP6 293 aa17.29■□□□□ 0.36
CLN3-249ENST00000636685 H3BNC9 293 aa17.29■□□□□ 0.36
CLN3-249ENST00000636685 NKRFO15226 690 aaKnown RBP eCLIP17.29■□□□□ 0.36
CLN3-249ENST00000636685 PARNO95453 639 aaKnown RBP17.29■□□□□ 0.36
CLN3-249ENST00000636685 SLC1A4P43007 532 aa17.29■□□□□ 0.36
CLN3-249ENST00000636685 HTRA4P83105 476 aaPredicted RBP17.29■□□□□ 0.36
CLN3-249ENST00000636685 DLX2Q07687 328 aaPredicted RBP17.29■□□□□ 0.36
CLN3-249ENST00000636685 RBL2Q08999 1139 aa17.29■□□□□ 0.36
CLN3-249ENST00000636685 ZKSCAN2Q63HK3 967 aa17.29■□□□□ 0.36
CLN3-249ENST00000636685 TRIM67Q6ZTA4 783 aa17.29■□□□□ 0.36
CLN3-249ENST00000636685 SUGP1Q8IWZ8 645 aaKnown RBP17.29■□□□□ 0.36
CLN3-249ENST00000636685 CLASRPQ8N2M8 674 aaKnown RBP17.29■□□□□ 0.36
CLN3-249ENST00000636685 GMCL1Q96IK5 515 aa17.29■□□□□ 0.36
CLN3-249ENST00000636685 STRBPQ96SI9 672 aaKnown RBP17.29■□□□□ 0.36
CLN3-249ENST00000636685 POP1Q99575 1024 aaKnown RBP17.29■□□□□ 0.36
CLN3-249ENST00000636685 ALG13Q9NP73 1137 aaKnown RBP17.29■□□□□ 0.36
CLN3-249ENST00000636685 PRR12Q9ULL5 1215 aa17.29■□□□□ 0.36
CLN3-249ENST00000636685 FAM186AA6NE01 2351 aa17.29■□□□□ 0.36
CLN3-249ENST00000636685 NFIBO00712 420 aa17.28■□□□□ 0.36
CLN3-249ENST00000636685 MBTPS2O43462 519 aa17.28■□□□□ 0.36
CLN3-249ENST00000636685 MBTPS1Q14703 1052 aa17.28■□□□□ 0.36
CLN3-249ENST00000636685 TRAF7Q6Q0C0 670 aa17.28■□□□□ 0.36
CLN3-249ENST00000636685 RASGRP2Q7LDG7 609 aa17.28■□□□□ 0.36
CLN3-249ENST00000636685 SESTD1Q86VW0 696 aa17.28■□□□□ 0.36
CLN3-249ENST00000636685 ITPRIPQ8IWB1 547 aa17.28■□□□□ 0.36
CLN3-249ENST00000636685 MYOCDQ8IZQ8 938 aa17.28■□□□□ 0.36
CLN3-249ENST00000636685 SAMD11Q96NU1 681 aa17.28■□□□□ 0.36
CLN3-249ENST00000636685 RALGAPA2Q2PPJ7 1873 aa17.27■□□□□ 0.36
CLN3-249ENST00000636685 PTPDC1A2A3K4 754 aa17.27■□□□□ 0.36
CLN3-249ENST00000636685 PLA2G6O60733 806 aa17.27■□□□□ 0.36
CLN3-249ENST00000636685 TXNP10599 105 aaKnown RBP17.27■□□□□ 0.36
CLN3-249ENST00000636685 PDE4DQ08499 809 aa17.27■□□□□ 0.36
CLN3-249ENST00000636685 SLC30A10Q6XR72 485 aa17.27■□□□□ 0.36
CLN3-249ENST00000636685 TMEM192Q8IY95 271 aa17.27■□□□□ 0.36
CLN3-249ENST00000636685 NEDD1Q8NHV4 660 aa17.27■□□□□ 0.36
CLN3-249ENST00000636685 SCFD2Q8WU76 684 aa17.27■□□□□ 0.36
CLN3-249ENST00000636685 KAT2BQ92831 832 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms