RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 UBA5Q9GZZ9 404 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 VAT1LQ9HCJ6 419 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 PDE11AQ9HCR9 933 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 TMEM260Q9NX78 707 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 LRWD1Q9UFC0 647 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 SIK3Q9Y2K2 1263 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 THSD7AQ9UPZ6 1657 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 LY75O60449 1722 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 C10orf71Q711Q0 1435 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 IPO7O95373 1038 aaKnown RBP14.23□□□□□ -0.13
LINC00540-203ENST00000631321 TXKP42681 527 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 ADCY7P51828 1080 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 EHHADHQ08426 723 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 NGLY1Q96IV0 654 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 C8orf37Q96NL8 207 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 TSGA10Q9BZW7 698 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 HDAC6Q9UBN7 1215 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 PLAGL2Q9UPG8 496 aa14.23□□□□□ -0.13
LINC00540-203ENST00000631321 TARSL2A2RTX5 802 aaKnown RBP14.22□□□□□ -0.13
LINC00540-203ENST00000631321 ENC1O14682 589 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 VAV2P52735 878 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 CKAP4Q07065 602 aaKnown RBP14.22□□□□□ -0.13
LINC00540-203ENST00000631321 MCM6Q14566 821 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 TMEM266Q2M3C6 531 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 TMEM119Q4V9L6 283 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 VWA3BQ502W6 1294 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 FAM196AQ6ZSG2 479 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 LARP4BQ92615 738 aaKnown RBP14.22□□□□□ -0.13
LINC00540-203ENST00000631321 RAD54LQ92698 747 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 RBM17Q96I25 401 aaKnown RBP14.22□□□□□ -0.13
LINC00540-203ENST00000631321 SLC39A2Q9NP94 309 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 NKRFO15226 690 aaKnown RBP eCLIP14.22□□□□□ -0.13
LINC00540-203ENST00000631321 SLC37A4O43826 429 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 BBOX1O75936 387 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 FGFR1OPO95684 399 aaKnown RBP14.22□□□□□ -0.13
LINC00540-203ENST00000631321 MCM3P25205 808 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 LRRC63Q05C16 580 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 CASP8Q14790 479 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 HPS3Q969F9 1004 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 EEF2KMTQ96G04 330 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 MMS19Q96T76 1030 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 RAB34Q9BZG1 259 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 ADAM21Q9UKJ8 722 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 TFR2Q9UP52 801 aa14.22□□□□□ -0.13
LINC00540-203ENST00000631321 LCA5LO95447 670 aa14.21□□□□□ -0.13
LINC00540-203ENST00000631321 PSMD2Q13200 908 aa14.21□□□□□ -0.13
LINC00540-203ENST00000631321 MAN2A1Q16706 1144 aa14.21□□□□□ -0.13
LINC00540-203ENST00000631321 PPP4R3AQ6IN85 833 aa14.21□□□□□ -0.13
LINC00540-203ENST00000631321 TBC1D16Q8TBP0 767 aa14.21□□□□□ -0.13
LINC00540-203ENST00000631321 LRRC27Q9C0I9 530 aa14.21□□□□□ -0.13
LINC00540-203ENST00000631321 NDST4Q9H3R1 872 aa14.21□□□□□ -0.13
LINC00540-203ENST00000631321 VIPAS39Q9H9C1 493 aa14.21□□□□□ -0.13
LINC00540-203ENST00000631321 SUGCTQ9HAC7 445 aa14.21□□□□□ -0.13
LINC00540-203ENST00000631321 POLLQ9UGP5 575 aa14.21□□□□□ -0.13
LINC00540-203ENST00000631321 DAGLAQ9Y4D2 1042 aa14.21□□□□□ -0.13
LINC00540-203ENST00000631321 ZNF263O14978 683 aa14.21□□□□□ -0.14
LINC00540-203ENST00000631321 TDP2O95551 362 aa14.21□□□□□ -0.14
LINC00540-203ENST00000631321 HOXA10P31260 410 aaPredicted RBP14.21□□□□□ -0.14
LINC00540-203ENST00000631321 LRRC55Q6ZSA7 311 aa14.21□□□□□ -0.14
LINC00540-203ENST00000631321 PCMTD1Q96MG8 357 aaPredicted RBP14.21□□□□□ -0.14
LINC00540-203ENST00000631321 RIC8AQ9NPQ8 531 aa14.21□□□□□ -0.14
LINC00540-203ENST00000631321 FRMPD2Q68DX3 1309 aaPredicted RBP14.2□□□□□ -0.14
LINC00540-203ENST00000631321 MYO3BQ8WXR4 1341 aa14.2□□□□□ -0.14
LINC00540-203ENST00000631321 CLK2P49760 499 aaKnown RBP14.2□□□□□ -0.14
LINC00540-203ENST00000631321 KIF5AQ12840 1032 aa14.2□□□□□ -0.14
LINC00540-203ENST00000631321 MUM1L1Q5H9M0 696 aa14.2□□□□□ -0.14
LINC00540-203ENST00000631321 CCDC84Q86UT8 332 aaPredicted RBP14.2□□□□□ -0.14
LINC00540-203ENST00000631321 COA7Q96BR5 231 aa14.2□□□□□ -0.14
LINC00540-203ENST00000631321 CCDC42Q96M95 316 aa14.2□□□□□ -0.14
LINC00540-203ENST00000631321 SUGT1Q9Y2Z0 365 aa14.2□□□□□ -0.14
LINC00540-203ENST00000631321 PNMA6FA0A0J9YX94 578 aa14.2□□□□□ -0.14
LINC00540-203ENST00000631321 SEPT2Q15019 361 aa14.2□□□□□ -0.14
LINC00540-203ENST00000631321 KRT79Q5XKE5 535 aa14.2□□□□□ -0.14
LINC00540-203ENST00000631321 ARHGAP27Q6ZUM4 889 aa14.2□□□□□ -0.14
LINC00540-203ENST00000631321 NEK11Q8NG66 645 aa14.2□□□□□ -0.14
LINC00540-203ENST00000631321 SECISBP2LQ93073 1101 aaKnown RBP14.2□□□□□ -0.14
LINC00540-203ENST00000631321 CDK5RAP3Q96JB5 506 aa14.2□□□□□ -0.14
LINC00540-203ENST00000631321 EDEM3Q9BZQ6 932 aa14.2□□□□□ -0.14
LINC00540-203ENST00000631321 SRGAP2O75044 1071 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 AKR1B1P15121 316 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 HNRNPH2P55795 449 aaKnown RBP14.19□□□□□ -0.14
LINC00540-203ENST00000631321 CYP27A1Q02318 531 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 ZNF543Q08ER8 600 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 SPA17Q15506 151 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 ZNF572Q7Z3I7 529 aaPredicted RBP14.19□□□□□ -0.14
LINC00540-203ENST00000631321 PROM2Q8N271 834 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 ARHGAP20Q9P2F6 1191 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 DUSP10Q9Y6W6 482 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 FOCADQ5VW36 1801 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 EPHB6O15197 1021 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 GYS1P13807 737 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 AARSP49588 968 aaKnown RBP eCLIP14.19□□□□□ -0.14
LINC00540-203ENST00000631321 MAP9Q49MG5 647 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 LRRC47Q8N1G4 583 aaKnown RBP14.19□□□□□ -0.14
LINC00540-203ENST00000631321 TRIM58Q8NG06 486 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 FAM71BQ8TC56 605 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 SNX29Q8TEQ0 813 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 CRAMP1Q96RY5 1269 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 NUDT12Q9BQG2 462 aa14.19□□□□□ -0.14
LINC00540-203ENST00000631321 ACBD3Q9H3P7 528 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms