RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 U2AF1L4Q8WU68 220 aaKnown RBP19.04■□□□□ 0.64
CCDC28A-202ENST00000611852 CUL5Q93034 780 aa19.04■□□□□ 0.64
CCDC28A-202ENST00000611852 PXMP2Q9NR77 195 aa19.04■□□□□ 0.64
CCDC28A-202ENST00000611852 B4DLN1 442 aa19.03■□□□□ 0.64
CCDC28A-202ENST00000611852 DEXIO95424 95 aa19.03■□□□□ 0.64
CCDC28A-202ENST00000611852 MRPL12P52815 198 aaKnown RBP19.03■□□□□ 0.64
CCDC28A-202ENST00000611852 ST3GAL1Q11201 340 aa19.03■□□□□ 0.64
CCDC28A-202ENST00000611852 ARHGEF16Q5VV41 709 aa19.03■□□□□ 0.64
CCDC28A-202ENST00000611852 LHX8Q68G74 356 aa19.03■□□□□ 0.64
CCDC28A-202ENST00000611852 SMARCC2Q8TAQ2 1214 aa19.03■□□□□ 0.64
CCDC28A-202ENST00000611852 ZSCAN31Q96LW9 406 aaPredicted RBP19.03■□□□□ 0.64
CCDC28A-202ENST00000611852 MPHOSPH6Q99547 160 aaKnown RBP19.03■□□□□ 0.64
CCDC28A-202ENST00000611852 RIC8AQ9NPQ8 531 aa19.03■□□□□ 0.64
CCDC28A-202ENST00000611852 DDX20Q9UHI6 824 aaKnown RBP19.03■□□□□ 0.64
CCDC28A-202ENST00000611852 ZHX1Q9UKY1 873 aaPredicted RBP19.03■□□□□ 0.64
CCDC28A-202ENST00000611852 LRRC37A2A6NM11 1700 aa19.02■□□□□ 0.64
CCDC28A-202ENST00000611852 SMCO2A6NFE2 343 aa19.02■□□□□ 0.64
CCDC28A-202ENST00000611852 DTNBO60941 627 aa19.02■□□□□ 0.64
CCDC28A-202ENST00000611852 CAPN15O75808 1086 aa19.02■□□□□ 0.64
CCDC28A-202ENST00000611852 CD2BP2O95400 341 aaKnown RBP19.02■□□□□ 0.64
CCDC28A-202ENST00000611852 EIF2AK2P19525 551 aaKnown RBP19.02■□□□□ 0.64
CCDC28A-202ENST00000611852 PDE4DQ08499 809 aa19.02■□□□□ 0.64
CCDC28A-202ENST00000611852 EEPD1Q7L9B9 569 aa19.02■□□□□ 0.64
CCDC28A-202ENST00000611852 IWS1Q96ST2 819 aa19.02■□□□□ 0.64
CCDC28A-202ENST00000611852 CRISPLD2Q9H0B8 497 aa19.02■□□□□ 0.64
CCDC28A-202ENST00000611852 SH2B1Q9NRF2 756 aaPredicted RBP19.02■□□□□ 0.64
CCDC28A-202ENST00000611852 STK36Q9NRP7 1315 aa19.02■□□□□ 0.64
CCDC28A-202ENST00000611852 MSCO60682 206 aa19.01■□□□□ 0.63
CCDC28A-202ENST00000611852 EN2P19622 333 aaPredicted RBP19.01■□□□□ 0.63
CCDC28A-202ENST00000611852 ADCY7P51828 1080 aa19.01■□□□□ 0.63
CCDC28A-202ENST00000611852 UBE2SQ16763 222 aa19.01■□□□□ 0.63
CCDC28A-202ENST00000611852 TEX2Q8IWB9 1127 aa19.01■□□□□ 0.63
CCDC28A-202ENST00000611852 FBXO16Q8IX29 292 aaPredicted RBP19.01■□□□□ 0.63
CCDC28A-202ENST00000611852 CCDC12Q8WUD4 166 aaPredicted RBP19.01■□□□□ 0.63
CCDC28A-202ENST00000611852 SHISA4Q96DD7 197 aa19.01■□□□□ 0.63
CCDC28A-202ENST00000611852 PDCD2LQ9BRP1 358 aa19.01■□□□□ 0.63
CCDC28A-202ENST00000611852 ZMYND12Q9H0C1 365 aa19.01■□□□□ 0.63
CCDC28A-202ENST00000611852 VTA1Q9NP79 307 aa19.01■□□□□ 0.63
CCDC28A-202ENST00000611852 ESYT2A0FGR8 921 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 NR3C2P08235 984 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 AKR1A1P14550 325 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 CCDC144BQ3MJ40 725 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 TAPT1Q6NXT6 567 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 NSUN7Q8NE18 718 aaKnown RBP19■□□□□ 0.63
CCDC28A-202ENST00000611852 AIFM3Q96NN9 605 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 GLT8D2Q9H1C3 349 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 SH3GLB2Q9NR46 395 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 VPS54Q9P1Q0 977 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 FAM184BQ9ULE4 1060 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 FRMPD4Q14CM0 1322 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 PGM5Q15124 567 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 ANO1Q5XXA6 986 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 CCDC83Q8IWF9 413 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 IL31RAQ8NI17 732 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 PDGFCQ9NRA1 345 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 OGDHLQ9ULD0 1010 aa19■□□□□ 0.63
CCDC28A-202ENST00000611852 FRMPD3Q5JV73 1810 aa18.99■□□□□ 0.63
CCDC28A-202ENST00000611852 ADCY6O43306 1168 aa18.99■□□□□ 0.63
CCDC28A-202ENST00000611852 TFRCP02786 760 aaKnown RBP18.99■□□□□ 0.63
CCDC28A-202ENST00000611852 FDPSP14324 419 aaKnown RBP18.99■□□□□ 0.63
CCDC28A-202ENST00000611852 STXBP2Q15833 593 aa18.99■□□□□ 0.63
CCDC28A-202ENST00000611852 VSIG10LQ86VR7 867 aa18.99■□□□□ 0.63
CCDC28A-202ENST00000611852 CCDC148Q8NFR7 591 aa18.99■□□□□ 0.63
CCDC28A-202ENST00000611852 C6orf50Q9HD87 102 aa18.99■□□□□ 0.63
CCDC28A-202ENST00000611852 ORC3Q9UBD5 711 aaPredicted RBP18.99■□□□□ 0.63
CCDC28A-202ENST00000611852 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.98■□□□□ 0.63
CCDC28A-202ENST00000611852 JAK2O60674 1132 aa18.98■□□□□ 0.63
CCDC28A-202ENST00000611852 RARBP10826 455 aa18.98■□□□□ 0.63
CCDC28A-202ENST00000611852 CAPN2P17655 700 aa18.98■□□□□ 0.63
CCDC28A-202ENST00000611852 ADCYAP1R1P41586 468 aa18.98■□□□□ 0.63
CCDC28A-202ENST00000611852 MCM2P49736 904 aa18.98■□□□□ 0.63
CCDC28A-202ENST00000611852 CLK2P49760 499 aaKnown RBP18.98■□□□□ 0.63
CCDC28A-202ENST00000611852 LENG1Q96BZ8 264 aaPredicted RBP18.98■□□□□ 0.63
CCDC28A-202ENST00000611852 PCDHA6Q9UN73 950 aa18.98■□□□□ 0.63
CCDC28A-202ENST00000611852 PCDHA8Q9Y5H6 950 aa18.98■□□□□ 0.63
CCDC28A-202ENST00000611852 RBM47A0AV96 593 aaKnown RBP18.97■□□□□ 0.63
CCDC28A-202ENST00000611852 SPDYE3A6NKU9 549 aa18.97■□□□□ 0.63
CCDC28A-202ENST00000611852 ADAMTS3O15072 1205 aa18.97■□□□□ 0.63
CCDC28A-202ENST00000611852 EIF3JO75822 258 aaKnown RBP18.97■□□□□ 0.63
CCDC28A-202ENST00000611852 MYCLP12524 364 aaPredicted RBP18.97■□□□□ 0.63
CCDC28A-202ENST00000611852 GNA11P29992 359 aa18.97■□□□□ 0.63
CCDC28A-202ENST00000611852 IQSEC1Q6DN90 963 aa18.97■□□□□ 0.63
CCDC28A-202ENST00000611852 LLPHQ9BRT6 129 aaKnown RBP18.97■□□□□ 0.63
CCDC28A-202ENST00000611852 FOSP01100 380 aaPredicted RBP18.96■□□□□ 0.63
CCDC28A-202ENST00000611852 CCND2P30279 289 aa18.96■□□□□ 0.63
CCDC28A-202ENST00000611852 TNFAIP2Q03169 654 aa18.96■□□□□ 0.63
CCDC28A-202ENST00000611852 FAM177A1Q8N128 213 aaPredicted RBP18.96■□□□□ 0.63
CCDC28A-202ENST00000611852 WASF1Q92558 559 aa18.96■□□□□ 0.63
CCDC28A-202ENST00000611852 TMX3Q96JJ7 454 aa18.96■□□□□ 0.63
CCDC28A-202ENST00000611852 TMEM260Q9NX78 707 aa18.96■□□□□ 0.63
CCDC28A-202ENST00000611852 DUSP11O75319 330 aaKnown RBP18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 SMPD1P17405 629 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 NLRP5P59047 1200 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 MRPS9P82933 396 aaKnown RBP18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 AP3B2Q13367 1082 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 TMEM63BQ5T3F8 832 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 PCNX4Q63HM2 1172 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 REXO1Q8N1G1 1221 aaKnown RBP18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 ANKLE1Q8NAG6 615 aa18.95■□□□□ 0.62
CCDC28A-202ENST00000611852 BICD2Q8TD16 824 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms