RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 C10orf71Q711Q0 1435 aa6.5□□□□□ -1.37
LINC00540-201ENST00000611481 TUBGCP6Q96RT7 1819 aa6.5□□□□□ -1.37
LINC00540-201ENST00000611481 TNRC18O15417 2968 aaPredicted RBP6.5□□□□□ -1.37
LINC00540-201ENST00000611481 BRD4O60885 1362 aaPredicted RBP6.5□□□□□ -1.37
LINC00540-201ENST00000611481 SYN1P17600 705 aa6.5□□□□□ -1.37
LINC00540-201ENST00000611481 PLCG1P19174 1290 aa6.5□□□□□ -1.37
LINC00540-201ENST00000611481 TFE3P19532 575 aaPredicted RBP6.5□□□□□ -1.37
LINC00540-201ENST00000611481 NFIXQ14938 502 aa6.5□□□□□ -1.37
LINC00540-201ENST00000611481 FAM13CQ8NE31 585 aa6.5□□□□□ -1.37
LINC00540-201ENST00000611481 JAG2Q9Y219 1238 aa6.5□□□□□ -1.37
LINC00540-201ENST00000611481 PXDNLA1KZ92 1463 aa6.49□□□□□ -1.37
LINC00540-201ENST00000611481 ANKRD30BQ9BXX2 1392 aa6.49□□□□□ -1.37
LINC00540-201ENST00000611481 OR14I1A6ND48 311 aa6.49□□□□□ -1.37
LINC00540-201ENST00000611481 LRRN2O75325 713 aa6.49□□□□□ -1.37
LINC00540-201ENST00000611481 RLBP1P12271 317 aa6.49□□□□□ -1.37
LINC00540-201ENST00000611481 TEKQ02763 1124 aa6.49□□□□□ -1.37
LINC00540-201ENST00000611481 C9orf131Q5VYM1 1079 aa6.49□□□□□ -1.37
LINC00540-201ENST00000611481 COL23A1Q86Y22 540 aaPredicted RBP6.49□□□□□ -1.37
LINC00540-201ENST00000611481 JARID2Q92833 1246 aaPredicted RBP6.49□□□□□ -1.37
LINC00540-201ENST00000611481 SHISA4Q96DD7 197 aa6.49□□□□□ -1.37
LINC00540-201ENST00000611481 AK5Q9Y6K8 562 aa6.49□□□□□ -1.37
LINC00540-201ENST00000611481 NHSQ6T4R5 1651 aa6.49□□□□□ -1.37
LINC00540-201ENST00000611481 LMO7Q8WWI1 1683 aa6.49□□□□□ -1.37
LINC00540-201ENST00000611481 COL5A2P05997 1499 aaPredicted RBP6.48□□□□□ -1.37
LINC00540-201ENST00000611481 PLEKHG2Q9H7P9 1386 aa6.48□□□□□ -1.37
LINC00540-201ENST00000611481 RBM47A0AV96 593 aaKnown RBP6.48□□□□□ -1.37
LINC00540-201ENST00000611481 UPK3BL1B0FP48 263 aa6.48□□□□□ -1.37
LINC00540-201ENST00000611481 UPK3BL2E5RIL1 263 aa6.48□□□□□ -1.37
LINC00540-201ENST00000611481 PSPNO60542 156 aa6.48□□□□□ -1.37
LINC00540-201ENST00000611481 TRIM13O60858 407 aa6.48□□□□□ -1.37
LINC00540-201ENST00000611481 TNNI2P48788 182 aa6.48□□□□□ -1.37
LINC00540-201ENST00000611481 SSPNQ14714 243 aa6.48□□□□□ -1.37
LINC00540-201ENST00000611481 CLEC16AQ2KHT3 1053 aa6.48□□□□□ -1.37
LINC00540-201ENST00000611481 TMEM201Q5SNT2 666 aa6.48□□□□□ -1.37
LINC00540-201ENST00000611481 TOM1L2Q6ZVM7 507 aa6.48□□□□□ -1.37
LINC00540-201ENST00000611481 LINC01599Q8WXQ3 324 aa6.48□□□□□ -1.37
LINC00540-201ENST00000611481 RTEL1Q9NZ71 1219 aa6.48□□□□□ -1.37
LINC00540-201ENST00000611481 EBF1Q9UH73 591 aa6.48□□□□□ -1.37
LINC00540-201ENST00000611481 CORINQ9Y5Q5 1042 aa6.48□□□□□ -1.37
LINC00540-201ENST00000611481 ABCC11Q96J66 1382 aa6.47□□□□□ -1.37
LINC00540-201ENST00000611481 HRKO00198 91 aa6.47□□□□□ -1.37
LINC00540-201ENST00000611481 PRPF40AO75400 957 aaKnown RBP6.47□□□□□ -1.37
LINC00540-201ENST00000611481 SASH1O94885 1247 aa6.47□□□□□ -1.37
LINC00540-201ENST00000611481 SAFB2Q14151 953 aaKnown RBP eCLIP6.47□□□□□ -1.37
LINC00540-201ENST00000611481 DBX2Q6ZNG2 339 aa6.47□□□□□ -1.37
LINC00540-201ENST00000611481 CCDC84Q86UT8 332 aaPredicted RBP6.47□□□□□ -1.37
LINC00540-201ENST00000611481 SLFN12Q8IYM2 578 aa6.47□□□□□ -1.37
LINC00540-201ENST00000611481 NGDNQ8NEJ9 315 aaKnown RBP6.47□□□□□ -1.37
LINC00540-201ENST00000611481 SIGLEC10Q96LC7 697 aa6.47□□□□□ -1.37
LINC00540-201ENST00000611481 KREMEN1Q96MU8 473 aa6.47□□□□□ -1.37
LINC00540-201ENST00000611481 ASPNQ9BXN1 380 aa6.47□□□□□ -1.37
LINC00540-201ENST00000611481 IRAK3Q9Y616 596 aa6.47□□□□□ -1.37
LINC00540-201ENST00000611481 USP6P35125 1406 aa6.47□□□□□ -1.37
LINC00540-201ENST00000611481 CNTNAP1P78357 1384 aa6.46□□□□□ -1.37
LINC00540-201ENST00000611481 TNRC6CQ9HCJ0 1690 aaKnown RBP6.46□□□□□ -1.37
LINC00540-201ENST00000611481 BTAF1O14981 1849 aa6.46□□□□□ -1.37
LINC00540-201ENST00000611481 EXOC5O00471 708 aa6.46□□□□□ -1.38
LINC00540-201ENST00000611481 PI3P19957 117 aa6.46□□□□□ -1.38
LINC00540-201ENST00000611481 GALK1P51570 392 aa6.46□□□□□ -1.38
LINC00540-201ENST00000611481 ADGRF1Q5T601 910 aa6.46□□□□□ -1.38
LINC00540-201ENST00000611481 ANKARQ7Z5J8 1434 aa6.46□□□□□ -1.38
LINC00540-201ENST00000611481 ZNF281Q9Y2X9 895 aa6.46□□□□□ -1.38
LINC00540-201ENST00000611481 NUP155O75694 1391 aa6.45□□□□□ -1.38
LINC00540-201ENST00000611481 KAT6BQ8WYB5 2073 aa6.45□□□□□ -1.38
LINC00540-201ENST00000611481 SHISA3A0PJX4 238 aa6.45□□□□□ -1.38
LINC00540-201ENST00000611481 BPNT1O95861 308 aa6.45□□□□□ -1.38
LINC00540-201ENST00000611481 SRSF3P84103 164 aaKnown RBP6.45□□□□□ -1.38
LINC00540-201ENST00000611481 NLRX1Q86UT6 975 aa6.45□□□□□ -1.38
LINC00540-201ENST00000611481 SIRT2Q8IXJ6 389 aa6.45□□□□□ -1.38
LINC00540-201ENST00000611481 CXorf38Q8TB03 319 aa6.45□□□□□ -1.38
LINC00540-201ENST00000611481 G6PC3Q9BUM1 346 aa6.45□□□□□ -1.38
LINC00540-201ENST00000611481 ASCC2Q9H1I8 757 aaPredicted RBP6.45□□□□□ -1.38
LINC00540-201ENST00000611481 SIRT5Q9NXA8 310 aa6.45□□□□□ -1.38
LINC00540-201ENST00000611481 RNF181Q9P0P0 153 aa6.45□□□□□ -1.38
LINC00540-201ENST00000611481 MBD1Q9UIS9 605 aaPredicted RBP6.45□□□□□ -1.38
LINC00540-201ENST00000611481 TLR6Q9Y2C9 796 aa6.45□□□□□ -1.38
LINC00540-201ENST00000611481 WNK3Q9BYP7 1800 aa6.45□□□□□ -1.38
LINC00540-201ENST00000611481 KNDC1Q76NI1 1749 aa6.45□□□□□ -1.38
LINC00540-201ENST00000611481 CPDO75976 1380 aa6.44□□□□□ -1.38
LINC00540-201ENST00000611481 TRPM1Q7Z4N2 1603 aa6.44□□□□□ -1.38
LINC00540-201ENST00000611481 KIF1BO60333 1816 aa6.44□□□□□ -1.38
LINC00540-201ENST00000611481 NOTOA8MTQ0 251 aa6.44□□□□□ -1.38
LINC00540-201ENST00000611481 SOX10P56693 466 aa6.44□□□□□ -1.38
LINC00540-201ENST00000611481 HABP4Q5JVS0 413 aaKnown RBP6.44□□□□□ -1.38
LINC00540-201ENST00000611481 RNF111Q6ZNA4 994 aa6.44□□□□□ -1.38
LINC00540-201ENST00000611481 PHC3Q8NDX5 983 aa6.44□□□□□ -1.38
LINC00540-201ENST00000611481 ENOX1Q8TC92 643 aaKnown RBP6.44□□□□□ -1.38
LINC00540-201ENST00000611481 DACT3Q96B18 629 aaPredicted RBP6.44□□□□□ -1.38
LINC00540-201ENST00000611481 GCC1Q96CN9 775 aa6.44□□□□□ -1.38
LINC00540-201ENST00000611481 CCDC74BQ96LY2 380 aa6.44□□□□□ -1.38
LINC00540-201ENST00000611481 NOC4LQ9BVI4 516 aaKnown RBP6.44□□□□□ -1.38
LINC00540-201ENST00000611481 XYLT2Q9H1B5 865 aa6.44□□□□□ -1.38
LINC00540-201ENST00000611481 CRTAC1Q9NQ79 661 aa6.44□□□□□ -1.38
LINC00540-201ENST00000611481 PKD1L3Q7Z443 1732 aa6.44□□□□□ -1.38
LINC00540-201ENST00000611481 CILPO75339 1184 aa6.43□□□□□ -1.38
LINC00540-201ENST00000611481 VEGFAP15692 232 aaPredicted RBP6.43□□□□□ -1.38
LINC00540-201ENST00000611481 RPL10P27635 214 aaKnown RBP6.43□□□□□ -1.38
LINC00540-201ENST00000611481 AFF3P51826 1226 aaKnown RBP6.43□□□□□ -1.38
LINC00540-201ENST00000611481 SLC14A2Q15849 920 aa6.43□□□□□ -1.38
LINC00540-201ENST00000611481 MEI1Q5TIA1 1274 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms