RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 NSUN6Q8TEA1 469 aaKnown RBP16.38■□□□□ 0.21
UPF1-211ENST00000600868 TBCKQ8TEA7 893 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 CRYGNQ8WXF5 182 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 FOXD4L4Q8WXT5 416 aaPredicted RBP16.38■□□□□ 0.21
UPF1-211ENST00000600868 USP6NLQ92738 828 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 ERO1AQ96HE7 468 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 PGBD1Q96JS3 809 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 TRIM47Q96LD4 638 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 PURBQ96QR8 312 aaKnown RBP16.38■□□□□ 0.21
UPF1-211ENST00000600868 NUDT12Q9BQG2 462 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 ARHGAP39Q9C0H5 1083 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 PXMP2Q9NR77 195 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 SLC5A4Q9NY91 659 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 ADD3Q9UEY8 706 aaKnown RBP16.38■□□□□ 0.21
UPF1-211ENST00000600868 GJD2Q9UKL4 321 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 DIS3Q9Y2L1 958 aaKnown RBP16.38■□□□□ 0.21
UPF1-211ENST00000600868 LCTP09848 1927 aa16.38■□□□□ 0.21
UPF1-211ENST00000600868 SOWAHBA6NEL2 793 aa16.37■□□□□ 0.21
UPF1-211ENST00000600868 FAM205CA6NFA0 338 aa16.37■□□□□ 0.21
UPF1-211ENST00000600868 COBLO75128 1261 aa16.37■□□□□ 0.21
UPF1-211ENST00000600868 GNRH1P01148 92 aa16.37■□□□□ 0.21
UPF1-211ENST00000600868 HOXC6P09630 235 aa16.37■□□□□ 0.21
UPF1-211ENST00000600868 TRAPPC10P48553 1259 aa16.37■□□□□ 0.21
UPF1-211ENST00000600868 USP11P51784 963 aa16.37■□□□□ 0.21
UPF1-211ENST00000600868 MAP2K5Q13163 448 aa16.37■□□□□ 0.21
UPF1-211ENST00000600868 ARHGEF6Q15052 776 aa16.37■□□□□ 0.21
UPF1-211ENST00000600868 INF2Q27J81 1249 aa16.37■□□□□ 0.21
UPF1-211ENST00000600868 ARHGEF16Q5VV41 709 aa16.37■□□□□ 0.21
UPF1-211ENST00000600868 DPP9Q86TI2 863 aa16.37■□□□□ 0.21
UPF1-211ENST00000600868 ZNF296Q8WUU4 475 aaPredicted RBP16.37■□□□□ 0.21
UPF1-211ENST00000600868 IWS1Q96ST2 819 aa16.37■□□□□ 0.21
UPF1-211ENST00000600868 DOCK3Q8IZD9 2030 aa16.36■□□□□ 0.21
UPF1-211ENST00000600868 B4DLN1 442 aa16.36■□□□□ 0.21
UPF1-211ENST00000600868 CYP3A4P08684 503 aa16.36■□□□□ 0.21
UPF1-211ENST00000600868 ALDH5A1P51649 535 aaPredicted RBP16.36■□□□□ 0.21
UPF1-211ENST00000600868 ARHGAP4P98171 946 aa16.36■□□□□ 0.21
UPF1-211ENST00000600868 RILPL1Q5EBL4 403 aa16.36■□□□□ 0.21
UPF1-211ENST00000600868 MYSM1Q5VVJ2 828 aa16.36■□□□□ 0.21
UPF1-211ENST00000600868 XRRA1Q6P2D8 792 aa16.36■□□□□ 0.21
UPF1-211ENST00000600868 ZNF467Q7Z7K2 595 aaPredicted RBP16.36■□□□□ 0.21
UPF1-211ENST00000600868 NEK8Q86SG6 692 aa16.36■□□□□ 0.21
UPF1-211ENST00000600868 CD99L2Q8TCZ2 262 aa16.36■□□□□ 0.21
UPF1-211ENST00000600868 FGD4Q96M96 766 aa16.36■□□□□ 0.21
UPF1-211ENST00000600868 PDCD2LQ9BRP1 358 aa16.36■□□□□ 0.21
UPF1-211ENST00000600868 NOL7Q9UMY1 257 aaKnown RBP16.36■□□□□ 0.21
UPF1-211ENST00000600868 ATP6V1DQ9Y5K8 247 aa16.36■□□□□ 0.21
UPF1-211ENST00000600868 ASTN1O14525 1302 aa16.36■□□□□ 0.21
UPF1-211ENST00000600868 EDIL3O43854 480 aa16.35■□□□□ 0.21
UPF1-211ENST00000600868 ECM2O94769 699 aaPredicted RBP16.35■□□□□ 0.21
UPF1-211ENST00000600868 EIF2AK2P19525 551 aaKnown RBP16.35■□□□□ 0.21
UPF1-211ENST00000600868 HOXD10P28358 340 aa16.35■□□□□ 0.21
UPF1-211ENST00000600868 CIITAP33076 1130 aa16.35■□□□□ 0.21
UPF1-211ENST00000600868 RGS2P41220 211 aa16.35■□□□□ 0.21
UPF1-211ENST00000600868 TOB1P50616 345 aaPredicted RBP16.35■□□□□ 0.21
UPF1-211ENST00000600868 CAP1Q01518 475 aa16.35■□□□□ 0.21
UPF1-211ENST00000600868 PGM5Q15124 567 aa16.35■□□□□ 0.21
UPF1-211ENST00000600868 PCNX4Q63HM2 1172 aa16.35■□□□□ 0.21
UPF1-211ENST00000600868 VSIG10LQ86VR7 867 aa16.35■□□□□ 0.21
UPF1-211ENST00000600868 MPHOSPH6Q99547 160 aaKnown RBP16.35■□□□□ 0.21
UPF1-211ENST00000600868 TSKSQ9UJT2 592 aa16.35■□□□□ 0.21
UPF1-211ENST00000600868 CEP350Q5VT06 3117 aa16.35■□□□□ 0.21
UPF1-211ENST00000600868 ZSWIM8A7E2V4 1837 aa16.35■□□□□ 0.21
UPF1-211ENST00000600868 PLXNA1Q9UIW2 1896 aa16.35■□□□□ 0.21
UPF1-211ENST00000600868 MYH7BA7E2Y1 1941 aa16.35■□□□□ 0.21
UPF1-211ENST00000600868 ASB14A6NK59 587 aa16.34■□□□□ 0.21
UPF1-211ENST00000600868 NR3C2P08235 984 aa16.34■□□□□ 0.21
UPF1-211ENST00000600868 XRCC5P13010 732 aaKnown RBP16.34■□□□□ 0.21
UPF1-211ENST00000600868 EDNRBP24530 442 aa16.34■□□□□ 0.21
UPF1-211ENST00000600868 CCND2P30279 289 aa16.34■□□□□ 0.21
UPF1-211ENST00000600868 ATL3Q6DD88 541 aa16.34■□□□□ 0.21
UPF1-211ENST00000600868 MOXD1Q6UVY6 613 aa16.34■□□□□ 0.21
UPF1-211ENST00000600868 MAMDC4Q6UXC1 1216 aa16.34■□□□□ 0.21
UPF1-211ENST00000600868 MSL3Q8N5Y2 521 aaKnown RBP16.34■□□□□ 0.21
UPF1-211ENST00000600868 IL31RAQ8NI17 732 aa16.34■□□□□ 0.21
UPF1-211ENST00000600868 NPLOC4Q8TAT6 608 aa16.34■□□□□ 0.21
UPF1-211ENST00000600868 MORC4Q8TE76 937 aa16.34■□□□□ 0.21
UPF1-211ENST00000600868 MAML3Q96JK9 1138 aa16.34■□□□□ 0.21
UPF1-211ENST00000600868 NAP1L4Q99733 375 aaKnown RBP16.34■□□□□ 0.21
UPF1-211ENST00000600868 APBA2Q99767 749 aa16.34■□□□□ 0.21
UPF1-211ENST00000600868 CYP3A7-CYP3A51PA0A087WV96 503 aa16.33■□□□□ 0.2
UPF1-211ENST00000600868 STAM2O75886 525 aa16.33■□□□□ 0.2
UPF1-211ENST00000600868 GCFC2P16383 781 aaKnown RBP16.33■□□□□ 0.2
UPF1-211ENST00000600868 CYP3A7P24462 503 aa16.33■□□□□ 0.2
UPF1-211ENST00000600868 UBXN2AP68543 259 aa16.33■□□□□ 0.2
UPF1-211ENST00000600868 ORC2Q13416 577 aaPredicted RBP16.33■□□□□ 0.2
UPF1-211ENST00000600868 LETM2Q2VYF4 491 aa16.33■□□□□ 0.2
UPF1-211ENST00000600868 TTC38Q5R3I4 469 aa16.33■□□□□ 0.2
UPF1-211ENST00000600868 PPP4R3AQ6IN85 833 aa16.33■□□□□ 0.2
UPF1-211ENST00000600868 FAM173BQ6P4H8 233 aa16.33■□□□□ 0.2
UPF1-211ENST00000600868 ZNF396Q96N95 335 aaPredicted RBP16.33■□□□□ 0.2
UPF1-211ENST00000600868 SRRDQ9UH36 339 aa16.33■□□□□ 0.2
UPF1-211ENST00000600868 WNT7AO00755 349 aa16.32■□□□□ 0.2
UPF1-211ENST00000600868 CCNT1O60563 726 aaKnown RBP16.32■□□□□ 0.2
UPF1-211ENST00000600868 CYP2B6P20813 491 aa16.32■□□□□ 0.2
UPF1-211ENST00000600868 FLT3LGP49771 235 aa16.32■□□□□ 0.2
UPF1-211ENST00000600868 PRMT2P55345 433 aa16.32■□□□□ 0.2
UPF1-211ENST00000600868 MRPS9P82933 396 aaKnown RBP16.32■□□□□ 0.2
UPF1-211ENST00000600868 PRKCZQ05513 592 aa16.32■□□□□ 0.2
UPF1-211ENST00000600868 STXBP2Q15833 593 aa16.32■□□□□ 0.2
UPF1-211ENST00000600868 CEP55Q53EZ4 464 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms