RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 BCCIPQ9P287 314 aaKnown RBP eCLIP20.36■□□□□ 0.85
UPF1-210ENST00000600689 MAGEA1P43355 309 aa20.36■□□□□ 0.85
UPF1-210ENST00000600689 HAUS3Q68CZ6 603 aa20.36■□□□□ 0.85
UPF1-210ENST00000600689 HEATR3Q7Z4Q2 680 aa20.36■□□□□ 0.85
UPF1-210ENST00000600689 STIM2Q9P246 746 aa20.36■□□□□ 0.85
UPF1-210ENST00000600689 GLI1P08151 1106 aa20.35■□□□□ 0.85
UPF1-210ENST00000600689 CFAP58Q5T655 872 aa20.35■□□□□ 0.85
UPF1-210ENST00000600689 DYMQ7RTS9 669 aa20.35■□□□□ 0.85
UPF1-210ENST00000600689 STAG2Q8N3U4 1231 aa20.35■□□□□ 0.85
UPF1-210ENST00000600689 TSPY2A6NKD2 308 aa20.35■□□□□ 0.85
UPF1-210ENST00000600689 GOLGA8KD6RF30 607 aa20.35■□□□□ 0.85
UPF1-210ENST00000600689 DNAAF5Q86Y56 855 aa20.35■□□□□ 0.85
UPF1-210ENST00000600689 KLHL7Q8IXQ5 586 aa20.35■□□□□ 0.85
UPF1-210ENST00000600689 TRIM58Q8NG06 486 aa20.35■□□□□ 0.85
UPF1-210ENST00000600689 A0A1W2PQC6 194 aa20.35■□□□□ 0.85
UPF1-210ENST00000600689 PLCG1P19174 1290 aa20.35■□□□□ 0.85
UPF1-210ENST00000600689 BLIDQ8IZY5 108 aa20.35■□□□□ 0.85
UPF1-210ENST00000600689 CHD4Q14839 1912 aa20.34■□□□□ 0.85
UPF1-210ENST00000600689 KLRC4O43908 158 aa20.34■□□□□ 0.85
UPF1-210ENST00000600689 IFT88Q13099 833 aa20.34■□□□□ 0.85
UPF1-210ENST00000600689 MEA1Q16626 185 aa20.34■□□□□ 0.85
UPF1-210ENST00000600689 P2RX5Q93086 422 aa20.34■□□□□ 0.85
UPF1-210ENST00000600689 THAP9Q9H5L6 903 aa20.34■□□□□ 0.85
UPF1-210ENST00000600689 TOM1O60784 492 aa20.34■□□□□ 0.85
UPF1-210ENST00000600689 HEXIM1O94992 359 aaKnown RBP20.34■□□□□ 0.85
UPF1-210ENST00000600689 ZNF384Q8TF68 577 aa20.34■□□□□ 0.85
UPF1-210ENST00000600689 BSDC1Q9NW68 430 aaPredicted RBP20.34■□□□□ 0.85
UPF1-210ENST00000600689 LAMB2P55268 1798 aa20.34■□□□□ 0.85
UPF1-210ENST00000600689 BCORQ6W2J9 1755 aa20.34■□□□□ 0.85
UPF1-210ENST00000600689 LRRC53A6NM62 1247 aa20.33■□□□□ 0.85
UPF1-210ENST00000600689 GNPATO15228 680 aa20.33■□□□□ 0.85
UPF1-210ENST00000600689 CPP00450 1065 aa20.33■□□□□ 0.85
UPF1-210ENST00000600689 GOLGA8HP0CJ92 632 aa20.33■□□□□ 0.85
UPF1-210ENST00000600689 EPHB4P54760 987 aa20.33■□□□□ 0.85
UPF1-210ENST00000600689 HLTFQ14527 1009 aaKnown RBP eCLIP20.33■□□□□ 0.85
UPF1-210ENST00000600689 SF3B3Q15393 1217 aaKnown RBP20.33■□□□□ 0.85
UPF1-210ENST00000600689 LETM2Q2VYF4 491 aa20.33■□□□□ 0.85
UPF1-210ENST00000600689 OR2W6PQ8NHA6 318 aa20.33■□□□□ 0.85
UPF1-210ENST00000600689 FAM84BQ96KN1 310 aaPredicted RBP20.33■□□□□ 0.85
UPF1-210ENST00000600689 ALS2CR12Q96Q35 445 aa20.33■□□□□ 0.85
UPF1-210ENST00000600689 KRT12Q99456 494 aa20.33■□□□□ 0.85
UPF1-210ENST00000600689 SH2D4AQ9H788 454 aa20.33■□□□□ 0.85
UPF1-210ENST00000600689 RBM28Q9NW13 759 aaKnown RBP20.33■□□□□ 0.85
UPF1-210ENST00000600689 ZNF804BA4D1E1 1349 aa20.33■□□□□ 0.85
UPF1-210ENST00000600689 PNPLA7Q6ZV29 1317 aa20.33■□□□□ 0.85
UPF1-210ENST00000600689 GOLGB1Q14789 3259 aaKnown RBP20.33■□□□□ 0.85
UPF1-210ENST00000600689 MYH10P35580 1976 aa20.33■□□□□ 0.85
UPF1-210ENST00000600689 ANO9A1A5B4 782 aa20.33■□□□□ 0.84
UPF1-210ENST00000600689 MAP2K2P36507 400 aa20.33■□□□□ 0.84
UPF1-210ENST00000600689 CCDC91Q7Z6B0 441 aa20.33■□□□□ 0.84
UPF1-210ENST00000600689 MTMR8Q96EF0 704 aa20.33■□□□□ 0.84
UPF1-210ENST00000600689 TTYH3Q9C0H2 523 aa20.33■□□□□ 0.84
UPF1-210ENST00000600689 GEMIN8Q9NWZ8 242 aaKnown RBP20.33■□□□□ 0.84
UPF1-210ENST00000600689 TFCP2L1Q9NZI6 479 aa20.33■□□□□ 0.84
UPF1-210ENST00000600689 HYOU1Q9Y4L1 999 aa20.33■□□□□ 0.84
UPF1-210ENST00000600689 SLC1A4P43007 532 aa20.33■□□□□ 0.84
UPF1-210ENST00000600689 LRRC41Q15345 812 aa20.33■□□□□ 0.84
UPF1-210ENST00000600689 CACNA2D4Q7Z3S7 1137 aa20.33■□□□□ 0.84
UPF1-210ENST00000600689 GOLPH3Q9H4A6 298 aa20.33■□□□□ 0.84
UPF1-210ENST00000600689 E7EVH7 732 aa20.32■□□□□ 0.84
UPF1-210ENST00000600689 LONP1P36776 959 aaKnown RBP20.32■□□□□ 0.84
UPF1-210ENST00000600689 ACTN3Q08043 901 aaPredicted RBP20.32■□□□□ 0.84
UPF1-210ENST00000600689 CASZ1Q86V15 1759 aa20.32■□□□□ 0.84
UPF1-210ENST00000600689 TECP42680 631 aa20.32■□□□□ 0.84
UPF1-210ENST00000600689 HDLBPQ00341 1268 aaKnown RBP20.32■□□□□ 0.84
UPF1-210ENST00000600689 CCDC170Q8IYT3 715 aa20.32■□□□□ 0.84
UPF1-210ENST00000600689 MMGT1Q8N4V1 131 aa20.32■□□□□ 0.84
UPF1-210ENST00000600689 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.32■□□□□ 0.84
UPF1-210ENST00000600689 YY1AP1Q9H869 796 aa20.32■□□□□ 0.84
UPF1-210ENST00000600689 MIIPQ5JXC2 388 aa20.31■□□□□ 0.84
UPF1-210ENST00000600689 SUGP1Q8IWZ8 645 aaKnown RBP20.31■□□□□ 0.84
UPF1-210ENST00000600689 FNBP4Q8N3X1 1017 aaPredicted RBP20.31■□□□□ 0.84
UPF1-210ENST00000600689 GIMAP8Q8ND71 665 aaPredicted RBP20.31■□□□□ 0.84
UPF1-210ENST00000600689 SH3GL2Q99962 352 aa20.31■□□□□ 0.84
UPF1-210ENST00000600689 VAT1LQ9HCJ6 419 aa20.31■□□□□ 0.84
UPF1-210ENST00000600689 CICQ96RK0 1608 aaPredicted RBP20.31■□□□□ 0.84
UPF1-210ENST00000600689 LSP1P33241 339 aa20.31■□□□□ 0.84
UPF1-210ENST00000600689 TXNRD1Q16881 649 aa20.31■□□□□ 0.84
UPF1-210ENST00000600689 CEP85LQ5SZL2 805 aa20.31■□□□□ 0.84
UPF1-210ENST00000600689 NBPF5PQ86XG9 351 aaPredicted RBP20.31■□□□□ 0.84
UPF1-210ENST00000600689 ZNF233A6NK53 670 aa20.3■□□□□ 0.84
UPF1-210ENST00000600689 SETQ01105 290 aaPredicted RBP20.3■□□□□ 0.84
UPF1-210ENST00000600689 CAVIN4Q5BKX8 364 aa20.3■□□□□ 0.84
UPF1-210ENST00000600689 CABP7Q86V35 215 aa20.3■□□□□ 0.84
UPF1-210ENST00000600689 C4orf32Q8N8J7 132 aa20.3■□□□□ 0.84
UPF1-210ENST00000600689 SETDB2Q96T68 719 aa20.3■□□□□ 0.84
UPF1-210ENST00000600689 MYH13Q9UKX3 1938 aa20.3■□□□□ 0.84
UPF1-210ENST00000600689 ECM2O94769 699 aaPredicted RBP20.3■□□□□ 0.84
UPF1-210ENST00000600689 CCNE1P24864 410 aa20.3■□□□□ 0.84
UPF1-210ENST00000600689 EHHADHQ08426 723 aa20.3■□□□□ 0.84
UPF1-210ENST00000600689 UBE4AQ14139 1066 aa20.3■□□□□ 0.84
UPF1-210ENST00000600689 VPS72Q15906 364 aa20.3■□□□□ 0.84
UPF1-210ENST00000600689 POTEDQ86YR6 584 aa20.3■□□□□ 0.84
UPF1-210ENST00000600689 RIOK1Q9BRS2 568 aaKnown RBP20.3■□□□□ 0.84
UPF1-210ENST00000600689 NUP58Q9BVL2 599 aa20.3■□□□□ 0.84
UPF1-210ENST00000600689 PFKFB3Q16875 520 aaPredicted RBP20.3■□□□□ 0.84
UPF1-210ENST00000600689 UBAP1LF5GYI3 381 aa20.29■□□□□ 0.84
UPF1-210ENST00000600689 NAA35Q5VZE5 725 aa20.29■□□□□ 0.84
UPF1-210ENST00000600689 GBP6Q6ZN66 633 aa20.29■□□□□ 0.84
UPF1-210ENST00000600689 TLR10Q9BXR5 811 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms