RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ADAMTS4O75173 837 aa18.72■□□□□ 0.59
LSM4-206ENST00000600289 DUSP11O75319 330 aaKnown RBP18.72■□□□□ 0.59
LSM4-206ENST00000600289 CPA1P15085 419 aa18.72■□□□□ 0.59
LSM4-206ENST00000600289 RXRAP19793 462 aa18.72■□□□□ 0.59
LSM4-206ENST00000600289 CASTP20810 708 aaKnown RBP18.72■□□□□ 0.59
LSM4-206ENST00000600289 MRPL12P52815 198 aaKnown RBP18.72■□□□□ 0.59
LSM4-206ENST00000600289 EVCP57679 992 aa18.72■□□□□ 0.59
LSM4-206ENST00000600289 ANAPC15P60006 121 aa18.72■□□□□ 0.59
LSM4-206ENST00000600289 NKX3-2P78367 333 aa18.72■□□□□ 0.59
LSM4-206ENST00000600289 CCDC144BQ3MJ40 725 aa18.72■□□□□ 0.59
LSM4-206ENST00000600289 Q6ZUG5 572 aa18.72■□□□□ 0.59
LSM4-206ENST00000600289 RUFY3Q7L099 469 aa18.72■□□□□ 0.59
LSM4-206ENST00000600289 MYLIPQ8WY64 445 aa18.72■□□□□ 0.59
LSM4-206ENST00000600289 FAM122AQ96E09 287 aa18.72■□□□□ 0.59
LSM4-206ENST00000600289 IL17RAQ96F46 866 aa18.72■□□□□ 0.59
LSM4-206ENST00000600289 LRRC41Q15345 812 aa18.71■□□□□ 0.59
LSM4-206ENST00000600289 RTN1Q16799 776 aa18.71■□□□□ 0.59
LSM4-206ENST00000600289 ANO1Q5XXA6 986 aa18.71■□□□□ 0.59
LSM4-206ENST00000600289 TAPT1Q6NXT6 567 aa18.71■□□□□ 0.59
LSM4-206ENST00000600289 TBC1D5Q92609 795 aa18.71■□□□□ 0.59
LSM4-206ENST00000600289 UPF3AQ9H1J1 476 aaKnown RBP18.71■□□□□ 0.59
LSM4-206ENST00000600289 SEMA6BQ9H3T3 888 aa18.71■□□□□ 0.59
LSM4-206ENST00000600289 COL20A1Q9P218 1284 aa18.71■□□□□ 0.59
LSM4-206ENST00000600289 SEC63Q9UGP8 760 aaKnown RBP18.71■□□□□ 0.59
LSM4-206ENST00000600289 CNTNAP5Q8WYK1 1306 aa18.71■□□□□ 0.59
LSM4-206ENST00000600289 SYNRGQ9UMZ2 1314 aa18.71■□□□□ 0.59
LSM4-206ENST00000600289 RBM47A0AV96 593 aaKnown RBP18.7■□□□□ 0.58
LSM4-206ENST00000600289 ADCY6O43306 1168 aa18.7■□□□□ 0.58
LSM4-206ENST00000600289 CST5P28325 142 aaPredicted RBP18.7■□□□□ 0.58
LSM4-206ENST00000600289 FGD1P98174 961 aa18.7■□□□□ 0.58
LSM4-206ENST00000600289 LRRC26Q2I0M4 334 aa18.7■□□□□ 0.58
LSM4-206ENST00000600289 IQSEC1Q6DN90 963 aa18.7■□□□□ 0.58
LSM4-206ENST00000600289 RNF180Q86T96 592 aa18.7■□□□□ 0.58
LSM4-206ENST00000600289 NSUN6Q8TEA1 469 aaKnown RBP18.7■□□□□ 0.58
LSM4-206ENST00000600289 BRF1Q92994 677 aa18.7■□□□□ 0.58
LSM4-206ENST00000600289 IWS1Q96ST2 819 aa18.7■□□□□ 0.58
LSM4-206ENST00000600289 CYP46A1Q9Y6A2 500 aa18.7■□□□□ 0.58
LSM4-206ENST00000600289 GOLGA8AA7E2F4 631 aa18.69■□□□□ 0.58
LSM4-206ENST00000600289 GOLGA8BA8MQT2 603 aa18.69■□□□□ 0.58
LSM4-206ENST00000600289 KBTBD13C9JR72 458 aa18.69■□□□□ 0.58
LSM4-206ENST00000600289 CFBP00751 764 aa18.69■□□□□ 0.58
LSM4-206ENST00000600289 GJA9P57773 515 aa18.69■□□□□ 0.58
LSM4-206ENST00000600289 FUT2Q10981 343 aa18.69■□□□□ 0.58
LSM4-206ENST00000600289 RAB11FIP4Q86YS3 637 aa18.69■□□□□ 0.58
LSM4-206ENST00000600289 FBXO16Q8IX29 292 aaPredicted RBP18.69■□□□□ 0.58
LSM4-206ENST00000600289 KLHDC9Q8NEP7 349 aa18.69■□□□□ 0.58
LSM4-206ENST00000600289 TSEN34Q9BSV6 310 aaKnown RBP18.69■□□□□ 0.58
LSM4-206ENST00000600289 TTYH1Q9H313 450 aaPredicted RBP18.69■□□□□ 0.58
LSM4-206ENST00000600289 FAM217BQ9NTX9 383 aaPredicted RBP18.69■□□□□ 0.58
LSM4-206ENST00000600289 PHF24Q9UPV7 400 aa18.69■□□□□ 0.58
LSM4-206ENST00000600289 GNEQ9Y223 722 aaKnown RBP18.69■□□□□ 0.58
LSM4-206ENST00000600289 Q9Y3F1 56 aa18.69■□□□□ 0.58
LSM4-206ENST00000600289 CCDC196A0A1B0GTZ2 297 aa18.68■□□□□ 0.58
LSM4-206ENST00000600289 TNFAIP2Q03169 654 aa18.68■□□□□ 0.58
LSM4-206ENST00000600289 PDE4DQ08499 809 aa18.68■□□□□ 0.58
LSM4-206ENST00000600289 APOBRQ0VD83 1088 aa18.68■□□□□ 0.58
LSM4-206ENST00000600289 TJAP1Q5JTD0 557 aa18.68■□□□□ 0.58
LSM4-206ENST00000600289 GJC2Q5T442 439 aaPredicted RBP18.68■□□□□ 0.58
LSM4-206ENST00000600289 TEX2Q8IWB9 1127 aa18.68■□□□□ 0.58
LSM4-206ENST00000600289 CMTR1Q8N1G2 835 aaKnown RBP18.68■□□□□ 0.58
LSM4-206ENST00000600289 LENG1Q96BZ8 264 aaPredicted RBP18.68■□□□□ 0.58
LSM4-206ENST00000600289 TAAR1Q96RJ0 339 aa18.68■□□□□ 0.58
LSM4-206ENST00000600289 RMDN3Q96TC7 470 aa18.68■□□□□ 0.58
LSM4-206ENST00000600289 PXMP2Q9NR77 195 aa18.68■□□□□ 0.58
LSM4-206ENST00000600289 FRMPD4Q14CM0 1322 aa18.68■□□□□ 0.58
LSM4-206ENST00000600289 GCOM1H8Y6P7 765 aaPredicted RBP18.67■□□□□ 0.58
LSM4-206ENST00000600289 hCG_1984214I3L0E3 225 aa18.67■□□□□ 0.58
LSM4-206ENST00000600289 PIK3CDO00329 1044 aa18.67■□□□□ 0.58
LSM4-206ENST00000600289 POLR2MP0CAP2 368 aa18.67■□□□□ 0.58
LSM4-206ENST00000600289 ADCYAP1R1P41586 468 aa18.67■□□□□ 0.58
LSM4-206ENST00000600289 METAP2P50579 478 aaKnown RBP eCLIP18.67■□□□□ 0.583e-7■■■■■ 36.2
LSM4-206ENST00000600289 CCSAPQ6IQ19 270 aaPredicted RBP18.67■□□□□ 0.58
LSM4-206ENST00000600289 ZNF713Q8N859 430 aaPredicted RBP18.67■□□□□ 0.58
LSM4-206ENST00000600289 DDX49Q9Y6V7 483 aaKnown RBP18.67■□□□□ 0.58
LSM4-206ENST00000600289 NCOR1O75376 2440 aa18.66■□□□□ 0.58
LSM4-206ENST00000600289 BDP1A6H8Y1 2624 aa18.66■□□□□ 0.58
LSM4-206ENST00000600289 TMEM265A0A087WTH1 108 aa18.66■□□□□ 0.58
LSM4-206ENST00000600289 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.66■□□□□ 0.58
LSM4-206ENST00000600289 MOXD2PA6NHM9 499 aa18.66■□□□□ 0.58
LSM4-206ENST00000600289 PGK1P00558 417 aa18.66■□□□□ 0.58
LSM4-206ENST00000600289 SMPD1P17405 629 aa18.66■□□□□ 0.58
LSM4-206ENST00000600289 CDC27P30260 824 aa18.66■□□□□ 0.58
LSM4-206ENST00000600289 TOB2Q14106 344 aaPredicted RBP18.66■□□□□ 0.58
LSM4-206ENST00000600289 SNX17Q15036 470 aa18.66■□□□□ 0.58
LSM4-206ENST00000600289 DUSP28Q4G0W2 176 aa18.66■□□□□ 0.58
LSM4-206ENST00000600289 C1orf53Q5VUE5 145 aa18.66■□□□□ 0.58
LSM4-206ENST00000600289 ALDH8A1Q9H2A2 487 aaPredicted RBP18.66■□□□□ 0.58
LSM4-206ENST00000600289 SPC25Q9HBM1 224 aa18.66■□□□□ 0.58
LSM4-206ENST00000600289 PDGFCQ9NRA1 345 aa18.66■□□□□ 0.58
LSM4-206ENST00000600289 MYH7BA7E2Y1 1941 aa18.65■□□□□ 0.58
LSM4-206ENST00000600289 CTAGE5O15320 804 aa18.65■□□□□ 0.58
LSM4-206ENST00000600289 FOSL2P15408 326 aa18.65■□□□□ 0.58
LSM4-206ENST00000600289 STXBP2Q15833 593 aa18.65■□□□□ 0.58
LSM4-206ENST00000600289 ARHGEF16Q5VV41 709 aa18.65■□□□□ 0.58
LSM4-206ENST00000600289 PPP1R18Q6NYC8 613 aa18.65■□□□□ 0.58
LSM4-206ENST00000600289 EEPD1Q7L9B9 569 aa18.65■□□□□ 0.58
LSM4-206ENST00000600289 USP38Q8NB14 1042 aa18.65■□□□□ 0.58
LSM4-206ENST00000600289 PCSK9Q8NBP7 692 aaKnown RBP18.65■□□□□ 0.58
LSM4-206ENST00000600289 SCFD2Q8WU76 684 aa18.65■□□□□ 0.58
LSM4-206ENST00000600289 PIBF1Q8WXW3 757 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms