RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 FSCN1Q16658 493 aaKnown RBP16.35■□□□□ 0.21
LIG1-218ENST00000599322 TRIM60Q495X7 471 aa16.35■□□□□ 0.21
LIG1-218ENST00000599322 DUSP28Q4G0W2 176 aa16.35■□□□□ 0.21
LIG1-218ENST00000599322 GPR153Q6NV75 609 aa16.35■□□□□ 0.21
LIG1-218ENST00000599322 TAPT1Q6NXT6 567 aa16.35■□□□□ 0.21
LIG1-218ENST00000599322 MYL10Q9BUA6 226 aa16.35■□□□□ 0.21
LIG1-218ENST00000599322 UBE2OQ9C0C9 1292 aaKnown RBP16.35■□□□□ 0.21
LIG1-218ENST00000599322 PDGFCQ9NRA1 345 aa16.35■□□□□ 0.21
LIG1-218ENST00000599322 RBM28Q9NW13 759 aaKnown RBP16.35■□□□□ 0.21
LIG1-218ENST00000599322 LAMA2P24043 3122 aaKnown RBP16.35■□□□□ 0.21
LIG1-218ENST00000599322 A0A0U1RQG5 324 aaPredicted RBP16.34■□□□□ 0.21
LIG1-218ENST00000599322 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.34■□□□□ 0.21
LIG1-218ENST00000599322 ZBTB43O43298 467 aa16.34■□□□□ 0.21
LIG1-218ENST00000599322 EPB41L2O43491 1005 aaKnown RBP16.34■□□□□ 0.21
LIG1-218ENST00000599322 PQBP1O60828 265 aaKnown RBP16.34■□□□□ 0.21
LIG1-218ENST00000599322 TXNP10599 105 aaKnown RBP16.34■□□□□ 0.21
LIG1-218ENST00000599322 MDM2Q00987 491 aaPredicted RBP16.34■□□□□ 0.21
LIG1-218ENST00000599322 TLE2Q04725 743 aa16.34■□□□□ 0.21
LIG1-218ENST00000599322 SNX17Q15036 470 aa16.34■□□□□ 0.21
LIG1-218ENST00000599322 BLOC1S2Q6QNY1 142 aa16.34■□□□□ 0.21
LIG1-218ENST00000599322 Q7L0L9 218 aa16.34■□□□□ 0.21
LIG1-218ENST00000599322 SGMS1Q86VZ5 419 aa16.34■□□□□ 0.21
LIG1-218ENST00000599322 MICU3Q86XE3 530 aa16.34■□□□□ 0.21
LIG1-218ENST00000599322 FANCBQ8NB91 859 aa16.34■□□□□ 0.21
LIG1-218ENST00000599322 OR6J1Q8NGC5 347 aa16.34■□□□□ 0.21
LIG1-218ENST00000599322 TAAR1Q96RJ0 339 aa16.34■□□□□ 0.21
LIG1-218ENST00000599322 LRRC2Q9BYS8 371 aa16.34■□□□□ 0.21
LIG1-218ENST00000599322 POLR3EQ9NVU0 708 aa16.34■□□□□ 0.21
LIG1-218ENST00000599322 GNEQ9Y223 722 aaKnown RBP16.34■□□□□ 0.21
LIG1-218ENST00000599322 RBM47A0AV96 593 aaKnown RBP16.33■□□□□ 0.2
LIG1-218ENST00000599322 KPNA6O60684 536 aa16.33■□□□□ 0.2
LIG1-218ENST00000599322 EIF3JO75822 258 aaKnown RBP16.33■□□□□ 0.2
LIG1-218ENST00000599322 CLTBP09497 229 aa16.33■□□□□ 0.2
LIG1-218ENST00000599322 EIF2AK2P19525 551 aaKnown RBP16.33■□□□□ 0.2
LIG1-218ENST00000599322 EDNRBP24530 442 aa16.33■□□□□ 0.2
LIG1-218ENST00000599322 HSD17B4P51659 736 aa16.33■□□□□ 0.2
LIG1-218ENST00000599322 BEX3Q00994 111 aa16.33■□□□□ 0.2
LIG1-218ENST00000599322 KCNV1Q6PIU1 500 aa16.33■□□□□ 0.2
LIG1-218ENST00000599322 SMARCC2Q8TAQ2 1214 aa16.33■□□□□ 0.2
LIG1-218ENST00000599322 TBC1D5Q92609 795 aa16.33■□□□□ 0.2
LIG1-218ENST00000599322 JAKMIP1Q96N16 626 aaKnown RBP16.33■□□□□ 0.2
LIG1-218ENST00000599322 TOX2Q96NM4 488 aa16.33■□□□□ 0.2
LIG1-218ENST00000599322 TMEM39AQ9NV64 488 aa16.33■□□□□ 0.2
LIG1-218ENST00000599322 ASTN1O14525 1302 aa16.33■□□□□ 0.2
LIG1-218ENST00000599322 CCDC196A0A1B0GTZ2 297 aa16.32■□□□□ 0.2
LIG1-218ENST00000599322 NR3C2P08235 984 aa16.32■□□□□ 0.2
LIG1-218ENST00000599322 MYCLP12524 364 aaPredicted RBP16.32■□□□□ 0.2
LIG1-218ENST00000599322 RAG1P15918 1043 aa16.32■□□□□ 0.2
LIG1-218ENST00000599322 HSPA4P34932 840 aa16.32■□□□□ 0.2
LIG1-218ENST00000599322 NKX3-2P78367 333 aa16.32■□□□□ 0.2
LIG1-218ENST00000599322 RTN1Q16799 776 aa16.32■□□□□ 0.2
LIG1-218ENST00000599322 SEPT14Q6ZU15 432 aa16.32■□□□□ 0.2
LIG1-218ENST00000599322 FCHSD1Q86WN1 690 aa16.32■□□□□ 0.2
LIG1-218ENST00000599322 RASEFQ8IZ41 740 aa16.32■□□□□ 0.2
LIG1-218ENST00000599322 DEFB123Q8N688 67 aa16.32■□□□□ 0.2
LIG1-218ENST00000599322 PXMP2Q9NR77 195 aa16.32■□□□□ 0.2
LIG1-218ENST00000599322 MCM3APO60318 1980 aa16.31■□□□□ 0.2
LIG1-218ENST00000599322 MYADML2A6NDP7 307 aa16.31■□□□□ 0.2
LIG1-218ENST00000599322 ARVCFO00192 962 aa16.31■□□□□ 0.2
LIG1-218ENST00000599322 CYTH3O43739 400 aa16.31■□□□□ 0.2
LIG1-218ENST00000599322 RXRAP19793 462 aa16.31■□□□□ 0.2
LIG1-218ENST00000599322 CCND2P30279 289 aa16.31■□□□□ 0.2
LIG1-218ENST00000599322 HOXA13P31271 388 aaPredicted RBP16.31■□□□□ 0.2
LIG1-218ENST00000599322 EXOSC10Q01780 885 aaKnown RBP16.31■□□□□ 0.2
LIG1-218ENST00000599322 CCSAPQ6IQ19 270 aaPredicted RBP16.31■□□□□ 0.2
LIG1-218ENST00000599322 CXCL17Q6UXB2 119 aa16.31■□□□□ 0.2
LIG1-218ENST00000599322 CCDC82Q8N4S0 544 aa16.31■□□□□ 0.2
LIG1-218ENST00000599322 SLC17A8Q8NDX2 589 aa16.31■□□□□ 0.2
LIG1-218ENST00000599322 MRVI1Q9Y6F6 885 aa16.31■□□□□ 0.2
LIG1-218ENST00000599322 DDX49Q9Y6V7 483 aaKnown RBP16.31■□□□□ 0.2
LIG1-218ENST00000599322 MYH6P13533 1939 aa16.31■□□□□ 0.2
LIG1-218ENST00000599322 KLF18A0A0U1RQI7 1052 aa16.3■□□□□ 0.2
LIG1-218ENST00000599322 GOLGA8AA7E2F4 631 aa16.3■□□□□ 0.2
LIG1-218ENST00000599322 GOLGA8BA8MQT2 603 aa16.3■□□□□ 0.2
LIG1-218ENST00000599322 ADCY6O43306 1168 aa16.3■□□□□ 0.2
LIG1-218ENST00000599322 PPP1R11O60927 126 aaPredicted RBP16.3■□□□□ 0.2
LIG1-218ENST00000599322 GH1P01241 217 aa16.3■□□□□ 0.2
LIG1-218ENST00000599322 MYL3P08590 195 aa16.3■□□□□ 0.2
LIG1-218ENST00000599322 GHRHRQ02643 423 aa16.3■□□□□ 0.2
LIG1-218ENST00000599322 ADCK5Q3MIX3 580 aa16.3■□□□□ 0.2
LIG1-218ENST00000599322 GNPTABQ3T906 1256 aa16.3■□□□□ 0.2
LIG1-218ENST00000599322 APOA5Q6Q788 366 aa16.3■□□□□ 0.2
LIG1-218ENST00000599322 TMTC3Q6ZXV5 915 aa16.3■□□□□ 0.2
LIG1-218ENST00000599322 ANKRD33Q7Z3H0 272 aa16.3■□□□□ 0.2
LIG1-218ENST00000599322 SRBD1Q8N5C6 995 aaKnown RBP16.3■□□□□ 0.2
LIG1-218ENST00000599322 EHMT1Q9H9B1 1298 aa16.3■□□□□ 0.2
LIG1-218ENST00000599322 PLEKHA8P1O95397 391 aa16.29■□□□□ 0.2
LIG1-218ENST00000599322 RCAN1P53805 252 aa16.29■□□□□ 0.2
LIG1-218ENST00000599322 ITGA7Q13683 1181 aa16.29■□□□□ 0.2
LIG1-218ENST00000599322 RAB11FIP4Q86YS3 637 aa16.29■□□□□ 0.2
LIG1-218ENST00000599322 TCEANC2Q96MN5 208 aa16.29■□□□□ 0.2
LIG1-218ENST00000599322 PDCD2LQ9BRP1 358 aa16.29■□□□□ 0.2
LIG1-218ENST00000599322 MTG1Q9BT17 334 aaPredicted RBP16.29■□□□□ 0.2
LIG1-218ENST00000599322 PSTPIP2Q9H939 334 aa16.29■□□□□ 0.2
LIG1-218ENST00000599322 PDLIM7Q9NR12 457 aa16.29■□□□□ 0.2
LIG1-218ENST00000599322 MTMR10Q9NXD2 777 aa16.29■□□□□ 0.2
LIG1-218ENST00000599322 COL20A1Q9P218 1284 aa16.29■□□□□ 0.2
LIG1-218ENST00000599322 SNX14Q9Y5W7 946 aa16.29■□□□□ 0.2
LIG1-218ENST00000599322 STAM2O75886 525 aa16.28■□□□□ 0.2
LIG1-218ENST00000599322 CASTP20810 708 aaKnown RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms