RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 SAMD3Q8N6K7 520 aa20.95■□□□□ 0.94
LIG1-216ENST00000598938 BARHL2Q9NY43 387 aa20.95■□□□□ 0.94
LIG1-216ENST00000598938 FLRT1Q9NZU1 646 aa20.95■□□□□ 0.94
LIG1-216ENST00000598938 ZMYND8Q9ULU4 1186 aaPredicted RBP20.95■□□□□ 0.94
LIG1-216ENST00000598938 FRMPD3Q5JV73 1810 aa20.94■□□□□ 0.94
LIG1-216ENST00000598938 PLXNA1Q9UIW2 1896 aa20.94■□□□□ 0.94
LIG1-216ENST00000598938 LCTP09848 1927 aa20.94■□□□□ 0.94
LIG1-216ENST00000598938 SOWAHBA6NEL2 793 aa20.94■□□□□ 0.94
LIG1-216ENST00000598938 STXBP3O00186 592 aa20.94■□□□□ 0.94
LIG1-216ENST00000598938 ZNF467Q7Z7K2 595 aaPredicted RBP20.94■□□□□ 0.94
LIG1-216ENST00000598938 MAP3K20Q9NYL2 800 aaKnown RBP20.94■□□□□ 0.94
LIG1-216ENST00000598938 STK36Q9NRP7 1315 aa20.94■□□□□ 0.94
LIG1-216ENST00000598938 CFBP00751 764 aa20.93■□□□□ 0.94
LIG1-216ENST00000598938 CALML3P27482 149 aa20.93■□□□□ 0.94
LIG1-216ENST00000598938 MAGEA10P43363 369 aaPredicted RBP20.93■□□□□ 0.94
LIG1-216ENST00000598938 TYW1BQ6NUM6 668 aa20.93■□□□□ 0.94
LIG1-216ENST00000598938 NSUN7Q8NE18 718 aaKnown RBP20.93■□□□□ 0.94
LIG1-216ENST00000598938 SYTL5Q8TDW5 730 aaPredicted RBP20.93■□□□□ 0.94
LIG1-216ENST00000598938 ASTN1O14525 1302 aa20.93■□□□□ 0.94
LIG1-216ENST00000598938 DEXIO95424 95 aa20.92■□□□□ 0.94
LIG1-216ENST00000598938 NAPAP54920 295 aa20.92■□□□□ 0.94
LIG1-216ENST00000598938 TRIM32Q13049 653 aa20.92■□□□□ 0.94
LIG1-216ENST00000598938 MAMDC4Q6UXC1 1216 aa20.92■□□□□ 0.94
LIG1-216ENST00000598938 CCDC83Q8IWF9 413 aa20.92■□□□□ 0.94
LIG1-216ENST00000598938 MSL3Q8N5Y2 521 aaKnown RBP20.92■□□□□ 0.94
LIG1-216ENST00000598938 PURBQ96QR8 312 aaKnown RBP20.92■□□□□ 0.94
LIG1-216ENST00000598938 COL20A1Q9P218 1284 aa20.92■□□□□ 0.94
LIG1-216ENST00000598938 GCOM1H8Y6P7 765 aaPredicted RBP20.91■□□□□ 0.94
LIG1-216ENST00000598938 PIK3CDO00329 1044 aa20.91■□□□□ 0.94
LIG1-216ENST00000598938 POLR2MP0CAP2 368 aa20.91■□□□□ 0.94
LIG1-216ENST00000598938 COL6A1P12109 1028 aa20.91■□□□□ 0.94
LIG1-216ENST00000598938 PRKAR2AP13861 404 aaKnown RBP20.91■□□□□ 0.94
LIG1-216ENST00000598938 DNERQ8NFT8 737 aa20.91■□□□□ 0.94
LIG1-216ENST00000598938 TMX3Q96JJ7 454 aa20.91■□□□□ 0.94
LIG1-216ENST00000598938 TINF2Q9BSI4 451 aa20.91■□□□□ 0.94
LIG1-216ENST00000598938 ADD3Q9UEY8 706 aaKnown RBP20.91■□□□□ 0.94
LIG1-216ENST00000598938 SYNGAP1Q96PV0 1343 aa20.9■□□□□ 0.94
LIG1-216ENST00000598938 LOC102724159A0A0B4J2E5 919 aa20.9■□□□□ 0.94
LIG1-216ENST00000598938 MEIS2O14770 477 aa20.9■□□□□ 0.94
LIG1-216ENST00000598938 DTNBO60941 627 aa20.9■□□□□ 0.94
LIG1-216ENST00000598938 SYN1P17600 705 aa20.9■□□□□ 0.94
LIG1-216ENST00000598938 HOXA13P31271 388 aaPredicted RBP20.9■□□□□ 0.94
LIG1-216ENST00000598938 PWP2Q15269 919 aaKnown RBP20.9■□□□□ 0.94
LIG1-216ENST00000598938 MFSD14CQ5VZR4 134 aa20.9■□□□□ 0.94
LIG1-216ENST00000598938 TEX2Q8IWB9 1127 aa20.9■□□□□ 0.94
LIG1-216ENST00000598938 LLPHQ9BRT6 129 aaKnown RBP20.9■□□□□ 0.94
LIG1-216ENST00000598938 UBE2OQ9C0C9 1292 aaKnown RBP20.9■□□□□ 0.94
LIG1-216ENST00000598938 PSTPIP2Q9H939 334 aa20.9■□□□□ 0.94
LIG1-216ENST00000598938 MTMR10Q9NXD2 777 aa20.9■□□□□ 0.94
LIG1-216ENST00000598938 ESYT2A0FGR8 921 aa20.89■□□□□ 0.93
LIG1-216ENST00000598938 JAK2O60674 1132 aa20.89■□□□□ 0.93
LIG1-216ENST00000598938 FDPSP14324 419 aaKnown RBP20.89■□□□□ 0.93
LIG1-216ENST00000598938 CYP2C19P33261 490 aa20.89■□□□□ 0.93
LIG1-216ENST00000598938 ALDH5A1P51649 535 aaPredicted RBP20.89■□□□□ 0.93
LIG1-216ENST00000598938 SMARCC2Q8TAQ2 1214 aa20.89■□□□□ 0.93
LIG1-216ENST00000598938 MORC4Q8TE76 937 aa20.89■□□□□ 0.93
LIG1-216ENST00000598938 CCDC12Q8WUD4 166 aaPredicted RBP20.89■□□□□ 0.93
LIG1-216ENST00000598938 TAAR1Q96RJ0 339 aa20.89■□□□□ 0.93
LIG1-216ENST00000598938 RIC8AQ9NPQ8 531 aa20.89■□□□□ 0.93
LIG1-216ENST00000598938 SH3GLB2Q9NR46 395 aa20.89■□□□□ 0.93
LIG1-216ENST00000598938 ORC3Q9UBD5 711 aaPredicted RBP20.89■□□□□ 0.93
LIG1-216ENST00000598938 SMCO2A6NFE2 343 aa20.88■□□□□ 0.93
LIG1-216ENST00000598938 ASB14A6NK59 587 aa20.88■□□□□ 0.93
LIG1-216ENST00000598938 CACNB2Q08289 660 aaPredicted RBP20.88■□□□□ 0.93
LIG1-216ENST00000598938 USP17L6PQ6QN14 398 aa20.88■□□□□ 0.93
LIG1-216ENST00000598938 FAM177A1Q8N128 213 aaPredicted RBP20.88■□□□□ 0.93
LIG1-216ENST00000598938 CUL5Q93034 780 aa20.88■□□□□ 0.93
LIG1-216ENST00000598938 AIFM3Q96NN9 605 aa20.88■□□□□ 0.93
LIG1-216ENST00000598938 ZMYND12Q9H0C1 365 aa20.88■□□□□ 0.93
LIG1-216ENST00000598938 VPS54Q9P1Q0 977 aa20.88■□□□□ 0.93
LIG1-216ENST00000598938 SNAI1O95863 264 aaPredicted RBP20.87■□□□□ 0.93
LIG1-216ENST00000598938 EDNRBP24530 442 aa20.87■□□□□ 0.93
LIG1-216ENST00000598938 ADCY7P51828 1080 aa20.87■□□□□ 0.93
LIG1-216ENST00000598938 MRPL12P52815 198 aaKnown RBP20.87■□□□□ 0.93
LIG1-216ENST00000598938 Q7L0L9 218 aa20.87■□□□□ 0.93
LIG1-216ENST00000598938 ARMCX2Q7L311 632 aa20.87■□□□□ 0.93
LIG1-216ENST00000598938 CCDC148Q8NFR7 591 aa20.87■□□□□ 0.93
LIG1-216ENST00000598938 WASF1Q92558 559 aa20.87■□□□□ 0.93
LIG1-216ENST00000598938 RMDN3Q96TC7 470 aa20.87■□□□□ 0.93
LIG1-216ENST00000598938 GLT8D2Q9H1C3 349 aa20.87■□□□□ 0.93
LIG1-216ENST00000598938 FRMPD4Q14CM0 1322 aa20.86■□□□□ 0.93
LIG1-216ENST00000598938 CYBAP13498 195 aa20.86■□□□□ 0.93
LIG1-216ENST00000598938 UBE2SQ16763 222 aa20.86■□□□□ 0.93
LIG1-216ENST00000598938 FAM109BQ6ICB4 259 aaPredicted RBP20.86■□□□□ 0.93
LIG1-216ENST00000598938 NSUN6Q8TEA1 469 aaKnown RBP20.86■□□□□ 0.93
LIG1-216ENST00000598938 SNX21Q969T3 373 aa20.86■□□□□ 0.93
LIG1-216ENST00000598938 PXMP2Q9NR77 195 aa20.86■□□□□ 0.93
LIG1-216ENST00000598938 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.86■□□□□ 0.93
LIG1-216ENST00000598938 NRBP1Q9UHY1 535 aa20.86■□□□□ 0.93
LIG1-216ENST00000598938 LRRC37A2A6NM11 1700 aa20.86■□□□□ 0.93
LIG1-216ENST00000598938 UNC80Q8N2C7 3258 aa20.86■□□□□ 0.93
LIG1-216ENST00000598938 CLK2P49760 499 aaKnown RBP20.85■□□□□ 0.93
LIG1-216ENST00000598938 LHX8Q68G74 356 aa20.85■□□□□ 0.93
LIG1-216ENST00000598938 FCHSD1Q86WN1 690 aa20.85■□□□□ 0.93
LIG1-216ENST00000598938 TRPV1Q8NER1 839 aa20.85■□□□□ 0.93
LIG1-216ENST00000598938 IWS1Q96ST2 819 aa20.85■□□□□ 0.93
LIG1-216ENST00000598938 ALG1Q9BT22 464 aa20.85■□□□□ 0.93
LIG1-216ENST00000598938 KATNBL1Q9H079 304 aa20.85■□□□□ 0.93
LIG1-216ENST00000598938 C6orf50Q9HD87 102 aa20.85■□□□□ 0.93
LIG1-216ENST00000598938 DDX49Q9Y6V7 483 aaKnown RBP20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms