RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 TAAR1Q96RJ0 339 aa19.3■□□□□ 0.68
USHBP1-208ENST00000598309 WDR11Q9BZH6 1224 aa19.3■□□□□ 0.68
USHBP1-208ENST00000598309 DYNC1LI2O43237 492 aaPredicted RBP19.29■□□□□ 0.68
USHBP1-208ENST00000598309 CABYRO75952 493 aa19.29■□□□□ 0.68
USHBP1-208ENST00000598309 IRX5P78411 483 aaPredicted RBP19.29■□□□□ 0.68
USHBP1-208ENST00000598309 TLE2Q04725 743 aa19.29■□□□□ 0.68
USHBP1-208ENST00000598309 PPP2R5BQ15173 497 aa19.29■□□□□ 0.68
USHBP1-208ENST00000598309 SYNE3Q6ZMZ3 975 aa19.29■□□□□ 0.68
USHBP1-208ENST00000598309 ANKRD33Q7Z3H0 272 aa19.29■□□□□ 0.68
USHBP1-208ENST00000598309 TOX2Q96NM4 488 aa19.29■□□□□ 0.68
USHBP1-208ENST00000598309 PDLIM7Q9NR12 457 aa19.29■□□□□ 0.68
USHBP1-208ENST00000598309 SEC63Q9UGP8 760 aaKnown RBP19.29■□□□□ 0.68
USHBP1-208ENST00000598309 MROH7Q68CQ1 1323 aa19.28■□□□□ 0.68
USHBP1-208ENST00000598309 A0A0U1RQG5 324 aaPredicted RBP19.28■□□□□ 0.68
USHBP1-208ENST00000598309 PLEKHA8P1O95397 391 aa19.28■□□□□ 0.68
USHBP1-208ENST00000598309 SLC34A2O95436 690 aa19.28■□□□□ 0.68
USHBP1-208ENST00000598309 RCAN1P53805 252 aa19.28■□□□□ 0.68
USHBP1-208ENST00000598309 BEX3Q00994 111 aa19.28■□□□□ 0.68
USHBP1-208ENST00000598309 TTLL4Q14679 1199 aa19.28■□□□□ 0.68
USHBP1-208ENST00000598309 STXBP2Q15833 593 aa19.28■□□□□ 0.68
USHBP1-208ENST00000598309 ARHGEF16Q5VV41 709 aa19.28■□□□□ 0.68
USHBP1-208ENST00000598309 APOA5Q6Q788 366 aa19.28■□□□□ 0.68
USHBP1-208ENST00000598309 TMTC3Q6ZXV5 915 aa19.28■□□□□ 0.68
USHBP1-208ENST00000598309 MICU3Q86XE3 530 aa19.28■□□□□ 0.68
USHBP1-208ENST00000598309 FANCBQ8NB91 859 aa19.28■□□□□ 0.68
USHBP1-208ENST00000598309 LBHD1Q9BQE6 289 aaPredicted RBP19.28■□□□□ 0.68
USHBP1-208ENST00000598309 PXMP2Q9NR77 195 aa19.28■□□□□ 0.68
USHBP1-208ENST00000598309 GCOM1H8Y6P7 765 aaPredicted RBP19.27■□□□□ 0.68
USHBP1-208ENST00000598309 PQBP1O60828 265 aaKnown RBP19.27■□□□□ 0.68
USHBP1-208ENST00000598309 CLTBP09497 229 aa19.27■□□□□ 0.68
USHBP1-208ENST00000598309 POLR2MP0CAP2 368 aa19.27■□□□□ 0.68
USHBP1-208ENST00000598309 RXRAP19793 462 aa19.27■□□□□ 0.68
USHBP1-208ENST00000598309 FXR1P51114 621 aaKnown RBP eCLIP19.27■□□□□ 0.68
USHBP1-208ENST00000598309 TMEM63BQ5T3F8 832 aa19.27■□□□□ 0.68
USHBP1-208ENST00000598309 SRBD1Q8N5C6 995 aaKnown RBP19.27■□□□□ 0.68
USHBP1-208ENST00000598309 SEZ6LQ9BYH1 1024 aa19.27■□□□□ 0.68
USHBP1-208ENST00000598309 RBM28Q9NW13 759 aaKnown RBP19.27■□□□□ 0.68
USHBP1-208ENST00000598309 BAZ2BQ9UIF8 2168 aaKnown RBP19.26■□□□□ 0.67
USHBP1-208ENST00000598309 EIF3JO75822 258 aaKnown RBP19.26■□□□□ 0.67
USHBP1-208ENST00000598309 NR3C2P08235 984 aa19.26■□□□□ 0.67
USHBP1-208ENST00000598309 EIF2AK2P19525 551 aaKnown RBP19.26■□□□□ 0.67
USHBP1-208ENST00000598309 PTGS1P23219 599 aa19.26■□□□□ 0.67
USHBP1-208ENST00000598309 CPT1AP50416 773 aa19.26■□□□□ 0.67
USHBP1-208ENST00000598309 CDK7P50613 346 aa19.26■□□□□ 0.67
USHBP1-208ENST00000598309 OR6J1Q8NGC5 347 aa19.26■□□□□ 0.67
USHBP1-208ENST00000598309 TCEANC2Q96MN5 208 aa19.26■□□□□ 0.67
USHBP1-208ENST00000598309 PDCD2LQ9BRP1 358 aa19.26■□□□□ 0.67
USHBP1-208ENST00000598309 PRDM5Q9NQX1 630 aaPredicted RBP19.26■□□□□ 0.67
USHBP1-208ENST00000598309 SNX14Q9Y5W7 946 aa19.26■□□□□ 0.67
USHBP1-208ENST00000598309 DCDC2CA8MYV0 355 aa19.25■□□□□ 0.67
USHBP1-208ENST00000598309 ARVCFO00192 962 aa19.25■□□□□ 0.67
USHBP1-208ENST00000598309 KIAA0355O15063 1070 aa19.25■□□□□ 0.67
USHBP1-208ENST00000598309 TXNP10599 105 aaKnown RBP19.25■□□□□ 0.67
USHBP1-208ENST00000598309 HOXA13P31271 388 aaPredicted RBP19.25■□□□□ 0.67
USHBP1-208ENST00000598309 MDM2Q00987 491 aaPredicted RBP19.25■□□□□ 0.67
USHBP1-208ENST00000598309 BRDTQ58F21 947 aaPredicted RBP19.25■□□□□ 0.67
USHBP1-208ENST00000598309 CCDC62Q6P9F0 684 aa19.25■□□□□ 0.67
USHBP1-208ENST00000598309 CXCL17Q6UXB2 119 aa19.25■□□□□ 0.67
USHBP1-208ENST00000598309 PIBF1Q8WXW3 757 aa19.25■□□□□ 0.67
USHBP1-208ENST00000598309 VTI1AQ96AJ9 217 aa19.25■□□□□ 0.67
USHBP1-208ENST00000598309 JAKMIP1Q96N16 626 aaKnown RBP19.25■□□□□ 0.67
USHBP1-208ENST00000598309 UBE2OQ9C0C9 1292 aaKnown RBP19.25■□□□□ 0.67
USHBP1-208ENST00000598309 POLR3EQ9NVU0 708 aa19.25■□□□□ 0.67
USHBP1-208ENST00000598309 RANBP2P49792 3224 aaKnown RBP19.25■□□□□ 0.67
USHBP1-208ENST00000598309 LTBP2Q14767 1821 aa19.25■□□□□ 0.67
USHBP1-208ENST00000598309 ZBTB43O43298 467 aa19.24■□□□□ 0.67
USHBP1-208ENST00000598309 ARIH2O95376 493 aa19.24■□□□□ 0.67
USHBP1-208ENST00000598309 RTN1Q16799 776 aa19.24■□□□□ 0.67
USHBP1-208ENST00000598309 BLOC1S2Q6QNY1 142 aa19.24■□□□□ 0.67
USHBP1-208ENST00000598309 RAB11FIP4Q86YS3 637 aa19.24■□□□□ 0.67
USHBP1-208ENST00000598309 TDHQ8IZJ6 230 aa19.24■□□□□ 0.67
USHBP1-208ENST00000598309 FBXL16Q8N461 479 aa19.24■□□□□ 0.67
USHBP1-208ENST00000598309 SLC43A3Q8NBI5 491 aa19.24■□□□□ 0.67
USHBP1-208ENST00000598309 BRPF3Q9ULD4 1205 aa19.24■□□□□ 0.67
USHBP1-208ENST00000598309 FRMPD4Q14CM0 1322 aa19.24■□□□□ 0.67
USHBP1-208ENST00000598309 DNAH12Q6ZR08 3092 aa19.23■□□□□ 0.67
USHBP1-208ENST00000598309 TRIM43BA6NCK2 446 aa19.23■□□□□ 0.67
USHBP1-208ENST00000598309 A6NJR5 290 aa19.23■□□□□ 0.67
USHBP1-208ENST00000598309 PIK3CDO00329 1044 aa19.23■□□□□ 0.67
USHBP1-208ENST00000598309 PSMA5P28066 241 aa19.23■□□□□ 0.67
USHBP1-208ENST00000598309 FGD1P98174 961 aa19.23■□□□□ 0.67
USHBP1-208ENST00000598309 FAAP100Q0VG06 881 aa19.23■□□□□ 0.67
USHBP1-208ENST00000598309 PGM5Q15124 567 aa19.23■□□□□ 0.67
USHBP1-208ENST00000598309 SEPT14Q6ZU15 432 aa19.23■□□□□ 0.67
USHBP1-208ENST00000598309 SH3RF1Q7Z6J0 888 aa19.23■□□□□ 0.67
USHBP1-208ENST00000598309 CMTR1Q8N1G2 835 aaKnown RBP19.23■□□□□ 0.67
USHBP1-208ENST00000598309 TRIM43Q96BQ3 446 aaPredicted RBP19.23■□□□□ 0.67
USHBP1-208ENST00000598309 CNTNAP5Q8WYK1 1306 aa19.23■□□□□ 0.67
USHBP1-208ENST00000598309 KLF18A0A0U1RQI7 1052 aa19.22■□□□□ 0.67
USHBP1-208ENST00000598309 KPNA6O60684 536 aa19.22■□□□□ 0.67
USHBP1-208ENST00000598309 CCND2P30279 289 aa19.22■□□□□ 0.67
USHBP1-208ENST00000598309 PURAQ00577 322 aaKnown RBP19.22■□□□□ 0.67
USHBP1-208ENST00000598309 ITGA7Q13683 1181 aa19.22■□□□□ 0.67
USHBP1-208ENST00000598309 VSIG10LQ86VR7 867 aa19.22■□□□□ 0.67
USHBP1-208ENST00000598309 FCHSD1Q86WN1 690 aa19.22■□□□□ 0.67
USHBP1-208ENST00000598309 FAM126BQ8IXS8 530 aa19.22■□□□□ 0.67
USHBP1-208ENST00000598309 COPS5Q92905 334 aa19.22■□□□□ 0.67
USHBP1-208ENST00000598309 CUL5Q93034 780 aa19.22■□□□□ 0.67
USHBP1-208ENST00000598309 TMEM39AQ9NV64 488 aa19.22■□□□□ 0.67
USHBP1-208ENST00000598309 TBX21Q9UL17 535 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms