RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 NYAP2Q9P242 653 aa19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 SIPA1L1O43166 1804 aa19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 NPM3O75607 178 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 TDP2O95551 362 aa19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 GH2P01242 217 aa19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 RPN1P04843 607 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 KCNA3P22001 575 aa19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 TXKP42681 527 aa19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 JAG1P78504 1218 aa19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 TMEM179Q6ZVK1 233 aa19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 MKL1Q969V6 931 aa19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 NUP88Q99567 741 aaPredicted RBP19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 PARD6BQ9BYG5 372 aa19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 CTNND2Q9UQB3 1225 aa19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 MAPK8IP1Q9UQF2 711 aa19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 MYH4Q9Y623 1939 aa19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 ZNF646O15015 1829 aaPredicted RBP19.09■□□□□ 0.65
SHKBP1-205ENST00000594973 GOLGA6L9A6NEM1 432 aa19.08■□□□□ 0.65
SHKBP1-205ENST00000594973 ENTPD3O75355 529 aa19.08■□□□□ 0.65
SHKBP1-205ENST00000594973 CORO7P57737 925 aa19.08■□□□□ 0.65
SHKBP1-205ENST00000594973 CABP7Q86V35 215 aa19.08■□□□□ 0.65
SHKBP1-205ENST00000594973 VSTM4Q8IW00 320 aa19.08■□□□□ 0.65
SHKBP1-205ENST00000594973 HNRNPLLQ8WVV9 542 aaKnown RBP19.08■□□□□ 0.65
SHKBP1-205ENST00000594973 CCSER1Q9C0I3 900 aa19.08■□□□□ 0.65
SHKBP1-205ENST00000594973 RIC8AQ9NPQ8 531 aa19.08■□□□□ 0.65
SHKBP1-205ENST00000594973 EIF3CLB5ME19 914 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-205ENST00000594973 H3BQF6 201 aa19.08■□□□□ 0.64
SHKBP1-205ENST00000594973 SLC37A4O43826 429 aa19.08■□□□□ 0.64
SHKBP1-205ENST00000594973 CPP00450 1065 aa19.08■□□□□ 0.64
SHKBP1-205ENST00000594973 PLCG1P19174 1290 aa19.08■□□□□ 0.64
SHKBP1-205ENST00000594973 GOLGA8FQ08AF8 430 aa19.08■□□□□ 0.64
SHKBP1-205ENST00000594973 GOLGA8DPQ0D2H9 430 aa19.08■□□□□ 0.64
SHKBP1-205ENST00000594973 LONRF2Q1L5Z9 754 aa19.08■□□□□ 0.64
SHKBP1-205ENST00000594973 SWT1Q5T5J6 900 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-205ENST00000594973 SPATA1Q5VX52 437 aa19.08■□□□□ 0.64
SHKBP1-205ENST00000594973 LRRC15Q8TF66 581 aa19.08■□□□□ 0.64
SHKBP1-205ENST00000594973 CUL5Q93034 780 aa19.08■□□□□ 0.64
SHKBP1-205ENST00000594973 EIF3CQ99613 913 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-205ENST00000594973 PSTPIP2Q9H939 334 aa19.08■□□□□ 0.64
SHKBP1-205ENST00000594973 SPDYE2BA6NHP3 402 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 F5H6K3 240 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 SPDYE6P0CI01 402 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 SNAP25P60880 206 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 KLRC3Q07444 240 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 RRP1BQ14684 758 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 CALCRLQ16602 461 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 QRICH1Q2TAL8 776 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 OGFOD1Q8N543 542 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 PSMD1Q99460 953 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 TMOD2Q9NZR1 351 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 GREB1LQ9C091 1923 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 PPP2R3AQ06190 1150 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 IKQ13123 557 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 RBM26Q5T8P6 1007 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 PPP1R18Q6NYC8 613 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 DCAF4Q8WV16 495 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 GOLGA1Q92805 767 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 AK8Q96MA6 479 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 GDAQ9Y2T3 454 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 MRFAP1Q9Y605 127 aa19.07■□□□□ 0.64
SHKBP1-205ENST00000594973 FANCGO15287 622 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 EDIL3O43854 480 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 MRPL12P52815 198 aaKnown RBP19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 DLGAP5Q15398 846 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 MTMR8Q96EF0 704 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 RNF216Q9NWF9 866 aaPredicted RBP19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 RMND1Q9NWS8 449 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 PCDHA1Q9Y5I3 950 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 ATRNL1Q5VV63 1379 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 USP17L15C9J2P7 530 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 USP17L13C9JLJ4 530 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 USP17L11C9JVI0 530 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 USP17L18D6R9N7 530 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 USP17L22D6RA61 530 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 USP17L17D6RBQ6 530 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 USP17L19D6RCP7 530 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 USP17L20D6RJB6 530 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 USP17L24Q0WX57 530 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 CDC37Q16543 378 aaPredicted RBP19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 CT47A1Q5JQC4 288 aaPredicted RBP19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 ZNF658Q5TYW1 1059 aaPredicted RBP19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 USP17L6PQ6QN14 398 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 VEZTQ9HBM0 779 aa19.06■□□□□ 0.64
SHKBP1-205ENST00000594973 VIL1P09327 827 aaKnown RBP19.05■□□□□ 0.64
SHKBP1-205ENST00000594973 SPICE1Q8N0Z3 855 aa19.05■□□□□ 0.64
SHKBP1-205ENST00000594973 COL4A5P29400 1685 aa19.05■□□□□ 0.64
SHKBP1-205ENST00000594973 EIF3JO75822 258 aaKnown RBP19.05■□□□□ 0.64
SHKBP1-205ENST00000594973 NDUFB10O96000 172 aa19.05■□□□□ 0.64
SHKBP1-205ENST00000594973 GRIPAP1Q4V328 841 aa19.05■□□□□ 0.64
SHKBP1-205ENST00000594973 CCDC91Q7Z6B0 441 aa19.05■□□□□ 0.64
SHKBP1-205ENST00000594973 MTMR9Q96QG7 549 aa19.05■□□□□ 0.64
SHKBP1-205ENST00000594973 KBTBD4Q9NVX7 518 aa19.05■□□□□ 0.64
SHKBP1-205ENST00000594973 HDAC9Q9UKV0 1011 aa19.05■□□□□ 0.64
SHKBP1-205ENST00000594973 POTEB2H3BUK9 544 aa19.04■□□□□ 0.64
SHKBP1-205ENST00000594973 ZBTB7AO95365 584 aa19.04■□□□□ 0.64
SHKBP1-205ENST00000594973 CLK2P49760 499 aaKnown RBP19.04■□□□□ 0.64
SHKBP1-205ENST00000594973 HDXQ7Z353 690 aa19.04■□□□□ 0.64
SHKBP1-205ENST00000594973 IGSF22Q8N9C0 903 aa19.04■□□□□ 0.64
SHKBP1-205ENST00000594973 GJA10Q969M2 543 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms